Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3674 ATGGCTCAACCTAGCAACGGTTCCGCCGATCTGAACCAAAACGCGCCGCCGCAGCAGCAGCAACCGCAGCAGTGGGCGGCGCAGCAACCGAATCAGTATCAGCAACAGCAATGGATGGCCATGCAGTATCCTGCAACCGCCATGGCTATGATGCAGCAACAGATGATGATGTACCCGCAGCATTACATGCCTTATGTACATCATCATTACCAGCCTCACCACCAGCAGCAGAAAGCAGCGGCGGCTGCGGCGGGGGCGGTGCCTCAGCAGCAGCACCAACAACACCATCACCAGCAGCAGCAGAAGCAGCAGCAAGGCGGTGGTGGTGGTGATGAGATCAGGACGATCTGGCTCGGTGACCTTCATCATTGGATGGATGAGAACTACGTTCATAACTGCTTCGCTCACACCGGCGAGGTTGTGTCAGCGAAGGTCATTCGGAATAAGCAAACTGGTCAGTCGGAGGGATATGGATTTGTGGAGTTCTATTCGCGAGCAACAGCTGAGAAAGTCTTGCAGAATTTTAACGGGACAATGATGCCAAATACAGATCAGGCATTCCGTCTTAATTGGGCTTCATTCAGCGCAGGTGAAAGGCGTTCTGAGGCTGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATAGATGTTACTGATGCCATGCTGCAAGAGACTTTTGGTAGCAGATTTTCGTCTATAAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGCCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGACAAGGGCAATGACCGAAATGAACGGTGTTTTTTGTTCCAATAGACCCATGCGAGTAGGTGTTGCAACGCCCAAGAAAACTTATGGCTATCAACAACAACAATATTCTTCACAAGCTGTAGTGTTAGCTGGTGGACATCCGTCTAATGGTGCTGTGGCCCAAGGTTCTCAGTCCGACGGGGATTCTAACAACACAACAATATTTGTTGGAGGGCTTGATTCTGATATCAGTGATGAGGATCTGAGACAACCGTTTTTGCAATTTGGTGATGTTGTCTCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGTTTCGTTCAATTTGCTGACAGAAAGAATGCGGAGGAAGCAATTCACGCATTGAATGGAACAGTGATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGCCGCAGTCCAGGAAATAAGCATTGGAGGTCTGATTCCAACGGCGGCCATTACGGTGGTCAGGGTTATGGAGGCCATGGATATGGAGCGAGACAGAATCAAGATATGGGTATGCATCCTACTGCTGCAATTCAAGGTGCTTCGTAA 1338 0.491 MAQPSNGSADLNQNAPPQQQQPQQWAAQQPNQYQQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHHHYQPHHQQQKAAAAAAGAVPQQQHQQHHHQQQQKQQQGGGGGDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGYQQQQYSSQAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGHYGGQGYGGHGYGARQNQDMGMHPTAAIQGAS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3674 445 SUPERFAMILY RNA-binding domain, RBD 319 428 IPR035979 GO:0003676
Lja4g3674 445 MobiDBLite consensus disorder prediction 70 112 - -
Lja4g3674 445 MobiDBLite consensus disorder prediction 1 30 - -
Lja4g3674 445 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 444 - -
Lja4g3674 445 CDD RRM2_SECp43_like 207 286 - -
Lja4g3674 445 MobiDBLite consensus disorder prediction 87 108 - -
Lja4g3674 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 194 IPR000504 GO:0003723
Lja4g3674 445 Gene3D - 310 435 IPR012677 -
Lja4g3674 445 Gene3D - 195 309 IPR012677 -
Lja4g3674 445 CDD RRM3_NGR1_NAM8_like 327 398 - -
Lja4g3674 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 393 IPR000504 GO:0003723
Lja4g3674 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 183 IPR000504 GO:0003723
Lja4g3674 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 280 IPR000504 GO:0003723
Lja4g3674 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 400 IPR000504 GO:0003723
Lja4g3674 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 287 IPR000504 GO:0003723
Lja4g3674 445 SMART rrm1_1 115 190 IPR000504 GO:0003723
Lja4g3674 445 SMART rrm1_1 209 283 IPR000504 GO:0003723
Lja4g3674 445 SMART rrm1_1 329 396 IPR000504 GO:0003723
Lja4g3674 445 SUPERFAMILY RNA-binding domain, RBD 113 288 IPR035979 GO:0003676
Lja4g3674 445 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 25 444 - -
Lja4g3674 445 MobiDBLite consensus disorder prediction 422 445 - -
Lja4g3674 445 Gene3D - 113 193 IPR012677 -
Lja4g3674 445 CDD RRM1_SECp43_like 115 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3674 Lja-Chr4 68560096 68564600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3674 95 407 Eukaryotic Initiation Factors Gene Family AT4G34110 29.781 1.07e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3674 - - lja:Lj4g3v0575400.2 607.831