Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3670 ATGTGTGTGCTGGAATATTCAAAACTATCAACGATAAAGAAAGACAATGACACATTTGTTGAAATTGGTTTTTCTATTAGACGTGATCACATTTACAAATCTACAAAGAATCAATCAGAGAACAATCCACTGGGTATTTATAAAAGGGAATTTGTTTGTCATCGTGCTGGTATTACTAAACAGAGCAAAGTTAGTGAAGTTGAAAGTCAAAGAAAACGAAAAACTTCAAGATGCAACTGTGGTGCAAAAATGCTGGTCACTACAAGGACAATTGAGGTTCAGTTTCTTCCTGCTTATCGTAGCATCCCAATTGTTGATCAAGACCGTATAATGTTGTTGTCAAAAGCTGGTTGCTCTATAAGTCTCATAATAAGAGTGCTTGAGCTAGAAAAAGGAATAGATACATGCACTCTACCATTTTTGGAGAGAGATATTAGAAATTTTATTCAATCTCAAAGTAGTATTGGTAAAGAAAGTGATGCTTCAAATGTCCTTAAATTATGCAAAAGTTTGAAAGATAGGGATGACTCATTCAAATATGATTTCACATTGGATGAAAATAACAAATTGGAGCATATTATATGGGCTTTTGGTGATTCAATTAGAGCATATGAAGCATTTGGAGATGTGGTTGTTTTTGATACCACATATAGAATAAATCGTTATGATATGCCTCTTGGAATATGGGTCGGATCTTTCCTATATTTTGTCAACGGCAAGCATCCAAAGACAATTCTTACGGATCAAGATGTGGCACTTAAAGAGGCAATTGCAATGGAGTTGCCAAACACAAAACATGCATTCTGTATATGGCATATTGTGGCAAAGTTATCAAGTTGGTTTTCTTTTTCATTGGGTTCACGATACAATGACTTTAAATATGAGTTTCATAAAGTATATCATTTAGAATGTGAAGATGATTTTGAGCATAAATGGACCTTGATGATTGCACAATTTGCTGGAGAAGAAGCAAGGATGCGTCAAAAGTACCATAATCCCCATATTAGAACAGGTTTTCCTATTGAGGAACAGGCTGCATCCATGCTTACACCGTATGCCTTTAAGTTGCTCCAACATGAGATTGAGTTATCTACAAAATATGCATCAACTGAAGAAGGAGAAAACTCTTATATCTTTCGATCTCTAGTTCAATGGCTACAAGTTGAATCTTTGAAGACAAAAGACCGAGAAGAAGTTGCAATTAGAGAACTAGAGAGAGTCATCCGAATTATTACAGATATGCCTGAAGAGCAAGAACATGCAGTTGATATGGAGCCTAATGTTCCAAATAGCAATGATTGTGATGTTGGAAATCCTATAATTTCAAAATCAAAAGGTCGGCCTAAAGGATCAAGGCCAAAAGGAGGAGTTGAGGTAGCAAAAAAGCCTCGTCATTGTCATGTTCCAAATTGCGGTGGAACCGATCATGATGCACGAAATTGTCCAAATAAAAAAAGAAATGTTGAAACATTTAGTTCTCAATCTCCTAATAAGATGAGAAAGGGTTGGGGAAAGTCATCTTAA 1524 0.3556 MCVLEYSKLSTIKKDNDTFVEIGFSIRRDHIYKSTKNQSENNPLGIYKREFVCHRAGITKQSKVSEVESQRKRKTSRCNCGAKMLVTTRTIEVQFLPAYRSIPIVDQDRIMLLSKAGCSISLIIRVLELEKGIDTCTLPFLERDIRNFIQSQSSIGKESDASNVLKLCKSLKDRDDSFKYDFTLDENNKLEHIIWAFGDSIRAYEAFGDVVVFDTTYRINRYDMPLGIWVGSFLYFVNGKHPKTILTDQDVALKEAIAMELPNTKHAFCIWHIVAKLSSWFSFSLGSRYNDFKYEFHKVYHLECEDDFEHKWTLMIAQFAGEEARMRQKYHNPHIRTGFPIEEQAASMLTPYAFKLLQHEIELSTKYASTEEGENSYIFRSLVQWLQVESLKTKDREEVAIRELERVIRIITDMPEEQEHAVDMEPNVPNSNDCDVGNPIISKSKGRPKGSRPKGGVEVAKKPRHCHVPNCGGTDHDARNCPNKKRNVETFSSQSPNKMRKGWGKSS* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3670 507 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 108 232 IPR031052 GO:0006355
Lja4g3670 507 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 233 319 IPR031052 GO:0006355
Lja4g3670 507 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 233 319 - -
Lja4g3670 507 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 108 232 - -
Lja4g3670 507 MobiDBLite consensus disorder prediction 485 507 - -
Lja4g3670 507 Pfam FAR1 DNA-binding domain 21 90 IPR004330 -
Lja4g3670 507 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 22 92 - -
Lja4g3670 507 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 22 92 IPR031052 GO:0006355
Lja4g3670 507 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 321 382 - -
Lja4g3670 507 Pfam MULE transposase domain 237 275 IPR018289 -
Lja4g3670 507 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 321 382 IPR031052 GO:0006355
Lja4g3670 507 MobiDBLite consensus disorder prediction 451 484 - -
Lja4g3670 507 MobiDBLite consensus disorder prediction 424 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3670 Lja-Chr4 68518800 68522907 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja4g3670 FAR1 9e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3670 - - ccaj:109802755 548.895