LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g3651	ATGTCAACCCTCACCGCCGAGCAAGAATTCTCCGTCATCGTCGCCACCCTCACCAACGTCATCGCCGGCTCCACCTCCACCGTCACCGCCGCCTTTCCAGACCACCAAACCACCACCTTTGACCGGATAGTCCCTCCACCTGCCTCCATGGAAACTTGCAAGGAATGCAACATTGCAGGATGCTTGGGATGCAAATTCTTCCCGGAAGAAGAGAGCAATAACAACAACAACAACAACAACAACAGCAACAGTAACAGTAACAGCAACAAGAAGAAGCAGCAGAAGAGGGCAAAGAAGAAATACAGGGGAGTGAGGCAGAGACCTTGGGGGAAATGGGCTGCTGAGATTCGCGACCCGAGGCGCGCGGCCCGGGTCTGGCTGGGGACGTTCAACAATGCAGAGGATGCCGCCCGGGCTTACGATAAGGCGGCGATCGAGTTCCGCGGGCCGCGGGCTAAGCTTAATTTTCCAATGGTCGATGAGTCGCTCATGAGCTTGCAGCAGCACGCGGCGGAGGCAGAAGTGGTTAATGCGCCGCCACCGCCTTCGGCTGGGAATGTGATCAACCAGGGAATGGAATTGGAAGGAGTTGATGGTGATCAATTTTGGGATAGGATTGGGGATGCGGATTTTCAACAGCTGATGATGATGATGGATTTTTCTAGAGATTCCTCTGACTCTGTTACTGGGAACACTCTTAGTAACAGTTCCTGA	714	0.5378	MSTLTAEQEFSVIVATLTNVIAGSTSTVTAAFPDHQTTTFDRIVPPPASMETCKECNIAGCLGCKFFPEEESNNNNNNNNNSNSNSNSNKKKQQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNNAEDAARAYDKAAIEFRGPRAKLNFPMVDESLMSLQQHAAEAEVVNAPPPPSAGNVINQGMELEGVDGDQFWDRIGDADFQQLMMMMDFSRDSSDSVTGNTLSNSS*	238

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g3651	237	MobiDBLite	consensus disorder prediction	74	90	-	-
	Lja4g3651	237	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	3	232	-	-
	Lja4g3651	237	SMART	rav1_2	100	163	IPR001471	GO:0003700\|GO:0006355
	Lja4g3651	237	ProSiteProfiles	AP2/ERF domain profile.	100	157	IPR001471	GO:0003700\|GO:0006355
	Lja4g3651	237	CDD	AP2	101	157	IPR001471	GO:0003700\|GO:0006355
	Lja4g3651	237	PRINTS	Ethylene responsive element binding protein signature	123	139	IPR001471	GO:0003700\|GO:0006355
	Lja4g3651	237	PRINTS	Ethylene responsive element binding protein signature	101	112	IPR001471	GO:0003700\|GO:0006355
	Lja4g3651	237	Gene3D	AP2/ERF domain	99	159	IPR036955	GO:0003700\|GO:0006355
	Lja4g3651	237	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109	3	232	-	-
	Lja4g3651	237	MobiDBLite	consensus disorder prediction	74	104	-	-
	Lja4g3651	237	Pfam	AP2 domain	100	149	IPR001471	GO:0003700\|GO:0006355
	Lja4g3651	237	SUPERFAMILY	DNA-binding domain	100	158	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g3651	Lja-Chr4	68232027	68233192	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja4g3651	4	160	AP2-EREBP Transcription Factor Family	AT4G34410	49.711	1.49e-36	128

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lja4g3651		AP2	2.4e-14	CL0081