Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3634 ATGGCCACCCCAAGTAAATCAGCACCAATAATGTCTTCAGACTCCTTCGAACAGAATGGGAAAATTATTGAATCAAATGCAAACATGCTTCAATGTCCTATAAACCAGCAACACTGTAACTCCTTAGATGGCCCTGTAGCTATCCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGTCCTGAAGATGTAGCAGGTAATATAAGAATGGCTTTGCGGGTGCACCCAGTAATTACAGGAGCTGTTATGTTGTTTTCTGCTTATGGGGACTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGCGAACTGGTGTTAAACTCATTGATGTTCCCAATGGGAGAAAAGATGCTGCTGACAAAGCTATCTTGGTTGACATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATCATGCTAATATCTGGAGATGTTGATTTTGCCCCTGCGCTTCACATTCTTGGTCAGCGGGGATATACAATAATTCTTGTCATCCCCGCTGGGGTGGGTGTTTCATCTGCGTTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTAGCGTGTCTCGTGGAGAAGGCTTTGTTCCTCCCTCTAGGGGTTTATTTCCACCCCGTGGAGGTCCAATGGAGCTTGCTGGATATTTCACGGGGTACCATATCAACGAAAACTCTGAAGGAGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGCTATTATAACTCGAGGGAATTCTCGCTTGTGTCACAGTCTCTATCTGAATACAACACAGCAAACATGCAGTGCTTGCCGGGAACTCTGAGATCGTATAGCCTTCCATCAGGAATAAATGATGTTGCAGGAGGAGCTATGCCTTCTAGTGACCATACTGAAGACCCGATATGGGTGCAACCTGGGGATTTAAATGGTCTCAAGGGTCAGATGGTAAGGTTGCTCGAACTTTTTGGAGGATACCTGCCTCTGACCCGAGTTCCAGCAGAGTACCAGAAAATTTATGGGAGACCTCTTTATATATCTGAATACGGAGCAATGAAGTTGGTCAATCTTTTCAAGAAGATGGGCGATACCATGGCTGTGGAAGGAAAAGGGCAAAGAAAATTTGTGTATCTCAGGAACTGGAAGACCAGCCCAAGTGCTCCTCCACTGTCTCTTGCAAAGAAAGATAAGAAAGGAAAAGGGGCGCAGGAAGAGAATGCAAACGTTGTCACTGGTGGCTGCTCTTCTGATGAGTTCTCAGATGAAGAAAGAGTAGTCATTGAAGAACACGATGGGAGAAGTTGCAGAGGGAAAGGTAACCAGGCGAGAGAATCCAGTTTTGAAATTGATGATCGTATTCTTGAGCAGTTCAAGTGCGAGCTGCAAGAGATCCTAGTCAGTTATTCTTGTCGAATATCCTTTGATTGTTTCGAGGATATATACAAGCAACGGTACAAGAAAAAACTGGAGTATCAGAGATTTGGGGTGGACAAGTTAGAGGATTTGTTGCAGGAAGTGAGTGATGTGGCAGTATTGCACGAGGAACCCGTAAGCAAGAAGAAGTTTCTGGCCGCCGTGGGTGGTTAG 1590 0.4491 MATPSKSAPIMSSDSFEQNGKIIESNANMLQCPINQQHCNSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVITGAVMLFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTIILVIPAGVGVSSALCNAGKFVWDWPSVSRGEGFVPPSRGLFPPRGGPMELAGYFTGYHINENSEGGQNEEEAIVYRGMSQSYYNSREFSLVSQSLSEYNTANMQCLPGTLRSYSLPSGINDVAGGAMPSSDHTEDPIWVQPGDLNGLKGQMVRLLELFGGYLPLTRVPAEYQKIYGRPLYISEYGAMKLVNLFKKMGDTMAVEGKGQRKFVYLRNWKTSPSAPPLSLAKKDKKGKGAQEENANVVTGGCSSDEFSDEERVVIEEHDGRSCRGKGNQARESSFEIDDRILEQFKCELQEILVSYSCRISFDCFEDIYKQRYKKKLEYQRFGVDKLEDLLQEVSDVAVLHEEPVSKKKFLAAVGG* 530
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3634 529 PANTHER - 10 524 - -
Lja4g3634 529 CDD LOTUS 310 379 - -
Lja4g3634 529 MobiDBLite consensus disorder prediction 389 408 - -
Lja4g3634 529 CDD PIN_limkain_b1_N_like 45 171 - -
Lja4g3634 529 Pfam NYN domain 45 185 IPR021139 GO:0004540
Lja4g3634 529 ProSiteProfiles OST-type HTH domain profile. 454 528 IPR025605 -
Lja4g3634 529 Pfam OST-HTH/LOTUS domain 313 376 IPR025605 -
Lja4g3634 529 Pfam OST-HTH/LOTUS domain 455 516 IPR025605 -
Lja4g3634 529 PANTHER LIMKAIN B LKAP 10 524 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lja4g3634 529 CDD LOTUS 455 517 - -
Lja4g3634 529 Gene3D - 450 522 IPR041966 -
Lja4g3634 529 Gene3D - 309 378 IPR041966 -
Lja4g3634 529 Gene3D - 43 191 - -
Lja4g3634 529 ProSiteProfiles OST-type HTH domain profile. 309 381 IPR025605 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja4g3634 Lja-Chr4 67996589 68000049 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3634 42 196 C2H2 Transcription Factor Family AT5G61190 41.935 1.17e-28 119