Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3633 ATGTTCTTCGTACCTTCCTCCTTGTTGGGATTGTTAATGTTGGCTTTTCTTGGAATGCAGTTCCCTGTTGTAATCTCTGATTGCCCCTTGGATTTTACTTCTTCAAACTTTACACTGGCAACCTCTTTATGCTCAAACCAAAGCAACAGGGGACAATGTTGCCGATACATTAATGCTAACATTGCGATTTCTGTTGCTCGTTTCGCTAATGCAACAAACGATTTAGGTGTCCCTCCAAATACTACTGATATCTGCCTCCAAACCATATCTCAGACCTTGCAACGTTACGGAGTTCCACAAAATGTAGCAGTTTTCTGTGGATTTGGGACAAAAATTCCAGTTAATTATGAATGCAAGGGCCGAACTAGTGTTGTGCATATGCTACAATCTCCCAGATTTGTGGAGGTTGAAAAGAATTGCAAATTGCCGCTTGGAAAGGAAAGTAGATGTAAGAAGTGCTTAAATGCAGGCTTTGGTTATCTGCATCATCTAGGAATTGCAGATAATATAACACTGAGCACATGCCGCGATGCCACTTTTGTTGCACTAGCAAGCCAAGTCAATGAGATATCTACTATTGACATTGCAAGTTGTTTCTTTGGAGTTCAAGGACTTCTCAGGCCTCCTGTTTCACAGTCACCTCCATCCTTCCCTGCTCCAAAGGCGTCTCCAAGTCCAGTGGTTGCTGCTGATAGCCCAAGTCAACTATTGTTAGGTGTACCTTCAAAGACAAACCACCATTCATATCACTTGACGTTAGTTCCATGGATTGCTATTGCAGTTACAGCTCTTGCTGTTACAGCGTTCATAGTCTTGATAGTTCTAATTCGCCAAAAAAGAAGAGAGTTAGATGAGCCTGAAAATTTTGGTAAAACCTTTTCAAAAACCTTACCACCTTCTGCAACATGGAAATTTCAGGAAGGTTCTTCATGTATGTTTCGAAAATTCAATTACAGTGAGATAAAGAAGGCAACAGAGGGGTTTAGCACCATTATTGGCCAAGGGGGGTTCGGAACAGTATATAAGGCTCATTTTAGTGATGGCCTAGTGGTAGCTGTAAAGCGAATGAACAGAGTCTCGGAACAGGGAGAGGATGAGTTTTGCAGAGAAATTGAGCTTCTTGCTCGGCTGCACCATCGGCATCTTGTTTCTTTGAGAGGCTTTTGCATCAAAAAACATGAGAGGTTTCTGTTGTATGAGTACATGGGAAATGGAAGCTTAAAAGATCATCTTCATTCCCCAGGTAAAACACCCTTAAGTTGGCGAACTCGAATCCAAATTGCCATTGATGTGGCTAATGCACTGGAGTACCTTCATTTCTATTGTGATCCTCCTCTGTGTCACAGAGATATTAAGTCCAGCAACACTTTACTGGACGAGAAATTTGTTGCTAAGATAGCTGATTTTGGCCTTGCACAAGCTTCAAATGATGGTTCGATATGCTTTGAACCTGTAAACACCGAAATCCGGGGAACTCCAGGTTATATGGATCCTGAATATATTGTTACTCAAGAGCTCACGGAGAAAAGCGATATATACAGTTTTGGGGTGTTACTATTGGAAATTGTAACAGGAAGACGAGCTATTCAAGATAACAAGAATTTGGTAGAATGGGCACAACCTTACATGGAATCAGAAACAAGTTTATTGGAGCTAGTAGATCCCAATGTGAGGGAGTCTTTTGACTTGGATCAGCTCCGAACAGTAATCTCCATAGTAGGATGGTGCACTCAGAGAGAAGGTAGGGCAAGACCTTCAATAAAACAGGTCCTTAGGCTTCTGTATGAGGCATCGGAACCGATGCACAGTGAGTTTCTACTAGCTGCGGAAGATGATGAATGTGAGGGAAATCAGCAGAGAGGAAGAAGAAGTAAAGGGAAGATCCAAAGAAATGAGGCAAATTTTCACACCGGGGATGGAAGATATCTTGCATCATCTTCTAGTACATCTCGGTCATATTGCAGTAGAAGCTTTTTGCTAGAGAATGGCTCACCACAGTCCCCACCAAATGTGTTCTCAATCTGA 2025 0.4202 MFFVPSSLLGLLMLAFLGMQFPVVISDCPLDFTSSNFTLATSLCSNQSNRGQCCRYINANIAISVARFANATNDLGVPPNTTDICLQTISQTLQRYGVPQNVAVFCGFGTKIPVNYECKGRTSVVHMLQSPRFVEVEKNCKLPLGKESRCKKCLNAGFGYLHHLGIADNITLSTCRDATFVALASQVNEISTIDIASCFFGVQGLLRPPVSQSPPSFPAPKASPSPVVAADSPSQLLLGVPSKTNHHSYHLTLVPWIAIAVTALAVTAFIVLIVLIRQKRRELDEPENFGKTFSKTLPPSATWKFQEGSSCMFRKFNYSEIKKATEGFSTIIGQGGFGTVYKAHFSDGLVVAVKRMNRVSEQGEDEFCREIELLARLHHRHLVSLRGFCIKKHERFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNTLLDEKFVAKIADFGLAQASNDGSICFEPVNTEIRGTPGYMDPEYIVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLVEWAQPYMESETSLLELVDPNVRESFDLDQLRTVISIVGWCTQREGRARPSIKQVLRLLYEASEPMHSEFLLAAEDDECEGNQQRGRRSKGKIQRNEANFHTGDGRYLASSSSTSRSYCSRSFLLENGSPQSPPNVFSI* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3633 674 Pfam SPARK 26 158 IPR043891 -
Lja4g3633 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Lja4g3633 674 SMART serkin_6 326 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3633 674 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Lja4g3633 674 CDD STKc_IRAK 332 594 - -
Lja4g3633 674 SUPERFAMILY Protein kinase-like (PK-like) 307 596 IPR011009 -
Lja4g3633 674 PANTHER BNAC06G02630D PROTEIN 11 674 - -
Lja4g3633 674 Gene3D Phosphorylase Kinase; domain 1 295 401 - -
Lja4g3633 674 PANTHER OS01G0750732 PROTEIN 11 674 - -
Lja4g3633 674 Pfam Protein kinase domain 330 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3633 674 Gene3D Transferase(Phosphotransferase) domain 1 402 615 - -
Lja4g3633 674 ProSiteProfiles Protein kinase domain profile. 326 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3633 Lja-Chr4 67988760 67994911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3633 21 673 Receptor kinase-like Gene Family AT3G19300 59.817 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Lja4g3633 Pkinase 1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3633 - - gmx:100807955 1115.91