Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3630 ATGCGTGGTTGTTTAGAACCATTAGATTTGGGGATTCAGATCCCTTACCACTACAGGTGCCCAATCTCACTTGAGCTCATGCGTGACCCGGTAACGGTGTGTACCGGTCAAACCTACGACCGATCCAGTATCGAGTCGTGGGTTAACACCGGTAACACCACATGCCCGGTCACGCGTGCGCCTCTAACCGAGTTCACACTAATCCCAAATCACACCCTCCGACGCCTCATCCAAGAGTGGTGCGTCGCCAACCGCGCTTTCGGCGTGGAGCGAATCCCCACTCCCAAACAGCCAGCAGAACCCGCTCTCGTCCGCTCCTTGCTCAACCAAATATCCTCCGCTTCAGCTTCAACTCACCACCGCCTCAACTCGCTCCGACGACTCAGACAACTCGCTCGTGACTCGGACTACAACCGCTCACTCATTGCCTCCCACGACGTCCGCCGCATCGTTCTCCGGATCTTCGATAACCGCTCCTCCGATGAGCTGAGTCACGAATCGCTCGCTCTACTCGTCATGTTTCCCCTCGCCGAGTCAGATTGCGCCGCCATCGCCGCCGATTTGGATAAAATTGGTTACCTCTCGGTTTTACTCTCTCATCAATCTCTCGACGTCCGAGTCAACTCAGCCGCGCTCATCGAGATGGTCGTCGCCGGGACTCACTCGGCTGACCTCCGATCTCAGGTGAGCAGCGTCGAAGGAATCCACGACGGCGTGGTGGAGATTCTCCGAAGCCCGATCTCGTACCCGCGCGCGCTCAAGGTCGGCGTAAAAGCTCTCTTCGCGCTGTGCCTGGTGAAGCAGTCACGGCAGAGAGCGGTTGCCGCCGGAGCGCCGGCGGTGCTAATCGACCGTCTCGCGGACTTTGAAAAGTGCGATGCGGAGAGGGCTTTGGCGACGGTGGAGCTCCTCTGCCGGGTTCCGGCGGGTTGTGCTGAGTTCGCCGGCCACGCGCTGACGGTGCCGATGCTGGTGAAGATAATATTGAAAATATCAGACCGTGCGACGGAGTACGCCGCCGGGGCGCTTCTTTCGCTGTGCTCGGAATCGGAGCGGTTACAGATGGAGGCGGTGGCGGCGGGGGTGCTGACTCAGCTTCTCCTCCTTGTGCAGAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAACTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCATCGGAAATTCGGACGATTTTGCGTGCAGCCAGCTTGTGGTGGTGCCTTTTTGA 1245 0.5871 MRGCLEPLDLGIQIPYHYRCPISLELMRDPVTVCTGQTYDRSSIESWVNTGNTTCPVTRAPLTEFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPAEPALVRSLLNQISSASASTHHRLNSLRRLRQLARDSDYNRSLIASHDVRRIVLRIFDNRSSDELSHESLALLVMFPLAESDCAAIAADLDKIGYLSVLLSHQSLDVRVNSAALIEMVVAGTHSADLRSQVSSVEGIHDGVVEILRSPISYPRALKVGVKALFALCLVKQSRQRAVAAGAPAVLIDRLADFEKCDAERALATVELLCRVPAGCAEFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERLQMEAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACSQLVVVPF* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3630 414 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Lja4g3630 414 Gene3D - 88 403 IPR011989 -
Lja4g3630 414 CDD RING-Ubox_PUB 18 59 IPR045210 -
Lja4g3630 414 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Lja4g3630 414 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Lja4g3630 414 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 410 - -
Lja4g3630 414 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Lja4g3630 414 PANTHER WDSAM1 PROTEIN 4 410 IPR045185 GO:0061630
Lja4g3630 414 SUPERFAMILY RING/U-box 12 90 - -
Lja4g3630 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 87 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3630 Lja-Chr4 67949234 67951045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3630 5 414 U-box Gene Family AT3G19380 65.311 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3630 - - gmx:100778730 677.937