Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3629 ATGGCTTTAGAAGGTCACGATTTGAATTTGGGTTTCGTGTGGGAAAGCCAGTCTTTGGGTTCTCTTCCCAATTTTGATAACGCAAGTGAGAGCAGAGAGAAGTTAGATATAAAGCCACAAAACAAGAAGGAAGAAGGAAATGGAGAAGAAGCTCTTGTGAATAAGAAGAGAAGTCGAGGTAATAGAAGAGAGAAGAATGTTGTCGCTGATGGTGAAGGGAAAGTTGATCACGAAGTGCAGATATGGATTGAGAGAGAAAGAAGAAAGAAAATGAGGAACATGTTCGATACCCTTCATGCTTTGCTTCCTAGGCTTCCCTCTAAGGCTGATAAGTCAACCATCATCGACGAAACAGTGAGCTATATAAAAACCTTGCAGGAGACCCTCGAAAAGCTTGAGAAACAGAAGCAAGAAAGGCTCCAATCATCTATGTTAAACTCGCAATGGCAACAACCCTGTGACTCAAGGGAGGGTCTTATTCCTGATATGGGATCTTCGATCAGCTTATCCTCTGGAATGGTGGGAATGAAAACTTCTTCAAATCCTTCAATTTCATCTAATTCAGCTTCTGTGCAACCAGTGGGTTTTCAAACATGGTCTTATCAAAATATAGTGTTGAATGTTATTGGATTTGAAGCACAATTTTCCATTTCTACTGCCAAGAAGAAAAGTACCTTAACCACCATTGTTTTTGTGCTGGAAAAGTATAAGATTGAGGTCATTTCTGCTAACATTGTATGCAACGGTAATTCAAATGTGTACCTCATTATTGCTCAAGCAAAACAAGATTCATATCTATTTCAAGATGTAAATTCGGTGGCTGAAATTTACAAGAAAGCGGCTGGAGAAATTCAGTTATTCATTGCTTAA 870 0.3908 MALEGHDLNLGFVWESQSLGSLPNFDNASESREKLDIKPQNKKEEGNGEEALVNKKRSRGNRREKNVVADGEGKVDHEVQIWIERERRKKMRNMFDTLHALLPRLPSKADKSTIIDETVSYIKTLQETLEKLEKQKQERLQSSMLNSQWQQPCDSREGLIPDMGSSISLSSGMVGMKTSSNPSISSNSASVQPVGFQTWSYQNIVLNVIGFEAQFSISTAKKKSTLTTIVFVLEKYKIEVISANIVCNGNSNVYLIIAQAKQDSYLFQDVNSVAEIYKKAAGEIQLFIA* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3629 289 Pfam Helix-loop-helix DNA-binding domain 83 126 IPR011598 GO:0046983
Lja4g3629 289 Gene3D - 71 153 IPR036638 GO:0046983
Lja4g3629 289 Coils Coil 115 142 - -
Lja4g3629 289 CDD bHLH_AtbHLH_like 80 133 IPR045239 -
Lja4g3629 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 125 IPR011598 GO:0046983
Lja4g3629 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
Lja4g3629 289 SMART finulus 81 131 IPR011598 GO:0046983
Lja4g3629 289 MobiDBLite consensus disorder prediction 29 71 - -
Lja4g3629 289 MobiDBLite consensus disorder prediction 23 71 - -
Lja4g3629 289 PANTHER - 30 287 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lja4g3629 289 PANTHER TRANSCRIPTION FACTOR BHLH95 30 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3629 Lja-Chr4 67928527 67930755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3629 11 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 32.911 5.11e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g3629 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3629 - - lja:Lj0g3v0099719.1 334.339