Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3628 ATGCAAGGTCAAAGGAGGACTGCTGGGTCCTTCCCAGCAATTGTTAGCATGATGCAAGGGCCTGGTTCTAGTGGCACTGATATGAATAACCAGTCTTCCTTGAATCATGTGCAAAATGCAGTAGATTTCCGGTTGTCAAATTATAGGGGGTCTACTGGTGAGACTGCACATTTACGTGGGACTGGTCCTAATGTCAGCTTCAGTGGCTGGAATAATGGAGAATCTAGTTCTGGACTGAATCTTATCAACCAAGTCAATGATGAAGGTCTAAAATCAGAACATGGGATGTCTTCTTTATGTGGTACAACTGCTGATAATGGTCTCAGACCTGAGGAAAGGCAATTGCATGTGAATCAATCTAGAATTCACCATTCCTTTTTGCAGGGTTCCAGCTCTAATCATATATCCCAGAATATTAGTCTCGATATGGGGCACATTCCTAACACTGCTGATCGTGGGAAGGGCATAGAAACTTCTAGTGCTGCTCATGACTGCAATCCTTGTGAATTAGGTAGAGAGAAGGCACCATTTGGCATTGCTTCATACAATCATATAGGAGCTTCATCTGAAAGTCCTGGATACATGGCTTGGGGAGATAGTGCCAGTTCATGGGGTCCTTCCTGCAAGAGAAAGGCCCTCGAAGGTAGTTCTGGGCATCTGTGTACTGAAGGAAGCTCAAGCTCTCTTGTGCAAACGGAAAATGGTTATTGGCCTACTGATCCTGTTGATCTTAATGCTTCCTGTAGCTTAAGTGATTCTACACCTTTAGAGGATTTTTCTGTTATTAGCCCTCCATTACAACAGAACACACGAAATGGGATGAGGCAAGAAGCTTCCAATGCATTTCCTTCCATGATAAGTGTTGCGGAAAATGTGGAAAGGCCTCTAAGAAACTTTGATAGGAGAATAACCCGACTACAGCATCAGGAATCTGGACCTCTCAATTTAACATCAACTGGGAGTGGTATACTTCATAATCATTCTTCTGCACATCAAATACCTGGCTCTCTCTTATTTAATGATTCCTTGGAATTGAGGTTAACAGCTGGAGCAACTGCTGCTAATTCTGGTGCTGTTCAGAACCAGACACCTGCCCTGCACATGCATCCTACTCCTTGGAATAGAGCTGCTAATCCTAGAGCTTCCAGAGCTTCAAGTTCTTATAGCTCTGGAGAAAGAGCAGTACGGGAAGATCTTAATTTAAGAATCTTTCCAAGAGATTCTACTGACCACTTCATGAATGTGCCTGCATCTTCAGGACTTGAACCTATGGGTTGGCATGCATCTTCTAGTAATGTGAACAATGCTGGAGGTATCCCTCCTACATCCTGGACTGGATCTAGTTTAAATGTCCATTCATTACCTAATCCCAACTGGACATTTAACCATGATGTCCCGGCGGAAAATCTGCAGAGAGTGTCAGAGTTGAGTCCTTGGTCCCTTTTTCCATCAATTAGCTCTGCACCTGGTACTCATCACAGCCATTCTATTTCTACCCCCTCTACTTCTGGTCCTCCTTCATCTTCTCAGGGTTCTAGCAACAATCAACCATATCGAAGAACAGCATTTTCAATGGAAAGAAGGGGTGGTGATGTTCTCTCTGGTCCTCATTCACTGCGAGCATTAGCCTTTGATAGTGAGGGGAGACGTCGACTAATATCTGAGATTCGCCAAGTCTTGACTGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGGTCTTTGACCCTTTCCTATATCATGGCTTAGCTGAAATGCATGACCGGCACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTATGAGGAACTATTGGCATTGGAAGAGCAAATAGGAGATGTGAGCACTGGATTGAGTGAGGATAACATTCATAAGTTAATGAAACAGCGGCTTTACATTTCTTTCATGGCTGAATCATCATCTGATCCTGAACCTTGCTGTATCTGTCAGGAGCAATATGCTAATGGAGAGATTATTGGTTCACTAGATTGTGGGCATGAGTTCCACACTAAGTGCATCAAGCAATGGCTTGTTCAGAAGAATCTGTGCCCCATTTGCAAAACAACAGCCTTAGCTACATGA 2091 0.4371 MQGQRRTAGSFPAIVSMMQGPGSSGTDMNNQSSLNHVQNAVDFRLSNYRGSTGETAHLRGTGPNVSFSGWNNGESSSGLNLINQVNDEGLKSEHGMSSLCGTTADNGLRPEERQLHVNQSRIHHSFLQGSSSNHISQNISLDMGHIPNTADRGKGIETSSAAHDCNPCELGREKAPFGIASYNHIGASSESPGYMAWGDSASSWGPSCKRKALEGSSGHLCTEGSSSSLVQTENGYWPTDPVDLNASCSLSDSTPLEDFSVISPPLQQNTRNGMRQEASNAFPSMISVAENVERPLRNFDRRITRLQHQESGPLNLTSTGSGILHNHSSAHQIPGSLLFNDSLELRLTAGATAANSGAVQNQTPALHMHPTPWNRAANPRASRASSSYSSGERAVREDLNLRIFPRDSTDHFMNVPASSGLEPMGWHASSSNVNNAGGIPPTSWTGSSLNVHSLPNPNWTFNHDVPAENLQRVSELSPWSLFPSISSAPGTHHSHSISTPSTSGPPSSSQGSSNNQPYRRTAFSMERRGGDVLSGPHSLRALAFDSEGRRRLISEIRQVLTAMRRGENLRAEDYMVFDPFLYHGLAEMHDRHREMRLDVDNMSYEELLALEEQIGDVSTGLSEDNIHKLMKQRLYISFMAESSSDPEPCCICQEQYANGEIIGSLDCGHEFHTKCIKQWLVQKNLCPICKTTALAT* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3628 696 Pfam Ring finger domain 649 690 IPR001841 -
Lja4g3628 696 MobiDBLite consensus disorder prediction 490 517 - -
Lja4g3628 696 ProSiteProfiles Zinc finger RING-type profile. 649 690 IPR001841 -
Lja4g3628 696 SMART ring_2 649 689 IPR001841 -
Lja4g3628 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 694 IPR013083 -
Lja4g3628 696 MobiDBLite consensus disorder prediction 1 32 - -
Lja4g3628 696 MobiDBLite consensus disorder prediction 17 32 - -
Lja4g3628 696 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 696 IPR045191 GO:0061630
Lja4g3628 696 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 3 696 - -
Lja4g3628 696 SUPERFAMILY RING/U-box 629 693 - -
Lja4g3628 696 MobiDBLite consensus disorder prediction 372 391 - -
Lja4g3628 696 CDD RING-H2_TTC3 648 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3628 Lja-Chr4 67920691 67925459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3628 18 696 C3H Transcription Factor Family AT2G15530 36.942 1.47e-101 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3628 - K19041 gmx:100809024 1008.44