Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3623 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGCCGGGACCCAACGGTGGTGGTGGTGGTGGTGCGGCGGCGGCGGGTGGCGCTGGAAACAACCAGTTTGTGACGACGTCGCTTTACGTTGGAGATCTTGACCCGAATGTGACGGATTCGCAGCTCTATGACTTGTTCAATCAGTTGGGTCAGGTTGTTTCTGTTAGGGTTTGCAGGGACTTGACTACTAGGAGGTCACTTGGCTATGGTTATGTTAACTTTACCAACCCTCAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAACAACAGGCCCATCCGTATTATGTATTCACATCGCGATCCCAGTATCCGTAAAAGTGGTGCTGGAAATATATTTATCAAGAATTTGGACAAAGCAATTGACCACAAGGCATTACATGATACTTTTTCAACATTTGGGAATATCCTTTCGTGCAAGGTGGCTACAGATTCATCTGGTCAATCTAAAGGCTATGGCTTTGTACAATTTGAGACTGAGGAAGCTGCTCAAAATGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAACAAGTGTATGTGGGGCCCTTCCTTCGCAAACAAGAAAGAGAAAGTTCGACTGACAAGGCCAAGTTCAACAATGTTTTTGTGAAGAACCTATCAGAATCAACAACTGATGATGAATTGAAGAATGTTTTTGGTGAATTTGGAACAATTACCAGTGCTGTTGTAATGAGGGATGGGGATGGGAAATCAAAGTGCTTTGGATTTGTGAACTTTGAGAATGCTGATGATGCTGCTAGAGCTGTTGAGTCTCTTAATGGGAAAAAGGTTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCAAGAATTGAAAAATAAATTTGAGCAGAGCATGAAAGAAGCTGCAGATAAATACCAAGGGGCAAACTTGTATGTCAAAAATTTAGATGATAGCATTGCTGATGAGAAACTTAAGGAGCTGTTCTCCTCTTATGGTACCATTACCTCTTGCAAGGTTATGAGAGACCCCAATGGCATAAGTCGAGGATCAGGGTTTGTTGCATTCTCAACTCCCGAGGAGGCATCTAGAGCACTCTTGGAGATGAACGGCAAAATGGTGGTAAGCAAACCACTATATGTGACTCTGGCACAGAGGAAAGAAGACAGAAGAGCTCGATTGCAGGCTCAATTTGCTCAAATGCGGCCTGTTGCAATGCCACCAGCTCCTCGTGTGCCAATGTACCCCCCAGGTGGTCCAGGTATTGGTCAGCAGATATTTTATGGTCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGGTACCAACAACAACTTGTGCCTGGTATGAGGCCTGGTGGAGCTCCTGTGCCAAATTTCTTCATGCCAATGGTTCCGCAGGGACAACAGGGACAGCGCCCTGGTGGAAGACGTGCTGGTGCAGTCCAGCAGTCCCAGCAGCCAGTTCCTCTTATGCCACAGCAGATGCTCCCTAGGGGCCGTGTGTACCGTTATCCTCCTGGTAGGGGTATGCCTGAGGTTCCTATGCCTGGGGTTGCTGGAGGCATGTTTTCTGTTCCCTATGATGTCAGTGGCATGCCGCTCCGCGATGGATCTCTCTCCCAGCAAATTCCTGTTGGGGCTTTGGCTTCTGCTCTTGCCAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCTCTCGTGGAACAGTTGGAGCCTGATAACGCTGCCAAAGTGACAGGCATGCTGCTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTCGAGTCACCAGAGGCCCTGAAAGCGAAGGTGGCTGAGGCAATGGATGTCCTCAGGAATGTCGCGCAGCAGCAGGCTGGCGGTGCTGCTGATCAGCTTGCTTCATTGTCACTTGGTGACAACCTTGTTTCTTAA 1968 0.4807 MAQVQVQPQNAMPGPNGGGGGGAAAAGGAGNNQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNFTNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFETEEAAQNAIEKLNGMLLNDKQVYVGPFLRKQERESSTDKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVESLNGKKVDDKEWYVGKAQKKSEREQELKNKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPAPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFMPMVPQGQQGQRPGGRRAGAVQQSQQPVPLMPQQMLPRGRVYRYPPGRGMPEVPMPGVAGGMFSVPYDVSGMPLRDGSLSQQIPVGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQAGGAADQLASLSLGDNLVS* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3623 655 SMART poly_2 569 632 IPR002004 GO:0003723
Lja4g3623 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 197 IPR000504 GO:0003723
Lja4g3623 655 PANTHER RNA BINDING PROTEIN 26 639 - -
Lja4g3623 655 Gene3D - 28 125 IPR012677 -
Lja4g3623 655 SMART rrm2_1 38 111 IPR003954 GO:0003676
Lja4g3623 655 SMART rrm2_1 126 198 IPR003954 GO:0003676
Lja4g3623 655 SMART rrm2_1 217 289 IPR003954 GO:0003676
Lja4g3623 655 SMART rrm2_1 320 392 IPR003954 GO:0003676
Lja4g3623 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Lja4g3623 655 SMART rrm1_1 320 392 IPR000504 GO:0003723
Lja4g3623 655 SMART rrm1_1 126 198 IPR000504 GO:0003723
Lja4g3623 655 SMART rrm1_1 38 111 IPR000504 GO:0003723
Lja4g3623 655 SMART rrm1_1 217 289 IPR000504 GO:0003723
Lja4g3623 655 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 38 630 IPR006515 GO:0003723
Lja4g3623 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723
Lja4g3623 655 CDD RRM4_I_PABPs 318 396 - -
Lja4g3623 655 CDD RRM2_I_PABPs 123 199 IPR045305 -
Lja4g3623 655 SUPERFAMILY RNA-binding domain, RBD 37 206 IPR035979 GO:0003676
Lja4g3623 655 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 557 634 IPR002004 GO:0003723
Lja4g3623 655 CDD RRM1_I_PABPs 38 117 - -
Lja4g3623 655 Gene3D - 126 198 IPR012677 -
Lja4g3623 655 MobiDBLite consensus disorder prediction 1 25 - -
Lja4g3623 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 109 IPR000504 GO:0003723
Lja4g3623 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 286 IPR000504 GO:0003723
Lja4g3623 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 195 IPR000504 GO:0003723
Lja4g3623 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 389 IPR000504 GO:0003723
Lja4g3623 655 SUPERFAMILY RNA-binding domain, RBD 216 399 IPR035979 GO:0003676
Lja4g3623 655 Gene3D - 553 636 - -
Lja4g3623 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 293 IPR000504 GO:0003723
Lja4g3623 655 Pfam Poly-adenylate binding protein, unique domain 565 629 IPR002004 GO:0003723
Lja4g3623 655 CDD RRM3_I_PABPs 215 294 - -
Lja4g3623 655 Gene3D - 301 404 IPR012677 -
Lja4g3623 655 Gene3D - 199 300 IPR012677 -
Lja4g3623 655 Coils Coil 291 315 - -
Lja4g3623 655 SUPERFAMILY PABC (PABP) domain 498 647 IPR036053 GO:0003723
Lja4g3623 655 PANTHER POLYADENYLATE-BINDING PROTEIN 26 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3623 Lja-Chr4 67823279 67835527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3623 36 654 Eukaryotic Initiation Factors Gene Family AT1G49760 75.911 0.0 924