Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3609 ATGGCGGTTCCCCCTAGAAGTTCCTCCAGCTTGGAATTGACCATAGGGTTTGCTTCTTCACCAACCCTTCATCACTCATCATTTGTGTTTGGTGTTACAGTGAAAGAATTGGACATGAACCGTGTACCCTTAGAAGAAGGATGGATGGGATCAAACATGGAAGATGAAGACGAAAACACCAATGGAGACACTCGCCACAAAAAGCTCCGTCTCACAAAGGAACAGTCCCGTCTCCTTGAAGAAAGATTTAGACAAAACCACACTTTAAACCCAAAGCAGAAAGAGTGTTTGGCAATGCAGCTGAAGCTCCAACCAAGACAAGTGGAAGTATGGTTTCAGAACCGCAGGGCTAGGAGCAAACTGAAGCAGACTGAGATGGAGTGCGAGTACTTGAAGAGGTGGTTCGGGTCATTGACAGAGCAGAACCGTAGATTGGAAAGGGAAGTGGAGGAACTCAGAGCCATGAAGGTGGGTCCCCCCACCGTGATAGCTCCTCATACTAGCAAGCCACTACCAGCATCCACACTTTCCATGTGTCCTTGCTGCGAGCGTGTCACCACCACCGTTGCCACCGTCGACAAAGCAAATACGGCTGCCGCCACTTTGTCTCCTAAAGTTGGGACGCCTGCTGCCCTCATGTCACGTTAA 648 0.4954 MAVPPRSSSSLELTIGFASSPTLHHSSFVFGVTVKELDMNRVPLEEGWMGSNMEDEDENTNGDTRHKKLRLTKEQSRLLEERFRQNHTLNPKQKECLAMQLKLQPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLEREVEELRAMKVGPPTVIAPHTSKPLPASTLSMCPCCERVTTTVATVDKANTAAATLSPKVGTPAALMSR* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3609 215 Pfam Homeodomain 65 120 IPR001356 GO:0003677
Lja4g3609 215 SUPERFAMILY Homeodomain-like 51 123 IPR009057 -
Lja4g3609 215 PANTHER - 1 204 - -
Lja4g3609 215 Pfam Homeobox associated leucine zipper 122 156 IPR003106 GO:0006355|GO:0043565
Lja4g3609 215 SMART HOX_1 64 126 IPR001356 GO:0003677
Lja4g3609 215 Gene3D - 50 126 - -
Lja4g3609 215 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Lja4g3609 215 Coils Coil 135 155 - -
Lja4g3609 215 CDD homeodomain 65 123 IPR001356 GO:0003677
Lja4g3609 215 SMART halz 122 165 IPR003106 GO:0006355|GO:0043565
Lja4g3609 215 MobiDBLite consensus disorder prediction 49 70 - -
Lja4g3609 215 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Lja4g3609 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3609 Lja-Chr4 67490434 67493805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3609 34 202 Homeobox Transcription Factor Family AT1G70920 57.471 2.07e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja4g3609 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3609 K09338 - gmx:100775341 308.916