Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3606 ATGGAAGAAGGTGGACTTAAGCCCGAAAGGGAGTCTGGGTTTTGCGGTTCTCCTGAGGTAGTTCAAGTCATACAAAAGGTAATAGCAGAGGTTATAGGGACATACTTCTTGGTATTTGCAGGGTGTTGTTCTGTGATTCTAAACAAAGTGGAAGGAAGTAAAGGGACAATAACGTTTCCAGGAATTTGTGTGGTATGGGGTCTAACAGTAATGATCTTGGTTTATTCTCTTGGTCATATATCTGGTGGCCATTTCAATCCAGCTGTTACTGTCAGCTTTGCAATCTATCGTCATTTCCCTCTGAAACAGGTACCTCTGTATCTTATAGCGCAGGTGCTAGGATCCATCCTTGCTAGTGGGACATTGTTCCTTCTATTTGATCTTGATGAGAATTCTTATTTTGGAACAACACCAGCAGGATCTCATATCCAGTCTCTAGTATTCGAGATCCTAACATCATTTCTCTTGATGTTTGTTGTATCAGCAGTTGCCACTGACAATAGAGCAATTGGAGAATTGGCAGGGATTGCTGTTGGCATGACAGTCTTAGTAGACGTCTTCGTTGCTGGGCCTGTGTCAGGAGCATCTATGAACCCAGCCAGAAGCATTGGACCTGCTTTGGTGATGCACATTTATAAAGGATTTTGGATTTACATAGTTGGACCCTTTCTTGGTGCCATATTAGGTGCCTCAGCTTATAACCTTATTAGATTTACTGATAAGCCTCTAAGAGAAATCAGCCAAAGCTCAAGTTTCCTCAAAAGCGTATCTAGAGGTGTTCGCTAG 786 0.4237 MEEGGLKPERESGFCGSPEVVQVIQKVIAEVIGTYFLVFAGCCSVILNKVEGSKGTITFPGICVVWGLTVMILVYSLGHISGGHFNPAVTVSFAIYRHFPLKQVPLYLIAQVLGSILASGTLFLLFDLDENSYFGTTPAGSHIQSLVFEILTSFLLMFVVSAVATDNRAIGELAGIAVGMTVLVDVFVAGPVSGASMNPARSIGPALVMHIYKGFWIYIVGPFLGAILGASAYNLIRFTDKPLREISQSSSFLKSVSRGVR* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3606 261 PANTHER AQUAPORIN NIP2-1 7 258 IPR034294 -
Lja4g3606 261 CDD MIP 25 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g3606 261 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g3606 261 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g3606 261 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g3606 261 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g3606 261 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g3606 261 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g3606 261 Gene3D Glycerol uptake facilitator protein. 7 250 IPR023271 -
Lja4g3606 261 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Lja4g3606 261 Pfam Major intrinsic protein 21 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g3606 261 TIGRFAM MIP: MIP family channel proteins 29 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g3606 261 PANTHER AQUAPORIN NIP-TYPE-RELATED 7 258 - -
Lja4g3606 261 SUPERFAMILY Aquaporin-like 22 246 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3606 Lja-Chr4 67421776 67423957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3606 11 257 Major Intrinsic Protein MIP AT5G37810 66.802 6.62e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3606 K09874 - gmx:100819179 399.438