Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3603 ATGGAAGATTTTATTGACTTTTCTCACTTTGAAGGAGTGAATTCTTTTTCTCTGAATGTTGAGTTTCATGATGATGGCTACAACTGGAAGAAGTATGGGTATAAGCAGGTGAAAGATTTTTTGTTCACTCGAAGTTATTATATGTGCACACATCAAGATTGTCCCGTTAAGAAGAATGTTGTGCATTCTCTTGACGGCCATGTAACTGAATTAGGTTATAAGGGAAATCACAATCACCAACCTCATCATCCCAACAATCTCACTTCAAATGAAAGTTCTATTATGAAAGAATCTATGAAAACTACAGTTCAACATGTGTCAGAAATAAGTGAGAGGCAGGAAATAGGTGGTCAAGAATTGGTTGAGAAAAATGATGAACCAGATCCTAAGAGAAGAAACACACAAATGGATCTTGTGGATATTCCAATATCTTCACGCTTCAATACCTTAAAGGATAGACTCATTGTGAAAATAATAAGCGATGTGGATATTTTGGATGATGGATATAAATGGCGCAAATATGGGCAAAAAGCTATTAAAGGCAGCCCAAATCCGAGGAGCTATTACAGATGCACAACCCCAAGTTGCATTATTCGAAAACATGTTGAAAGGGATCCTACAGATATAGCAACTGTTATAACAACATATGAAGGAAAGCATAATCATGATGTGCCACCACCTACTACTAAGAGCCTCATTCTTGCCAAAGCTAGCGCATTGCGGCTAAGATCATAA 735 0.3714 MEDFIDFSHFEGVNSFSLNVEFHDDGYNWKKYGYKQVKDFLFTRSYYMCTHQDCPVKKNVVHSLDGHVTELGYKGNHNHQPHHPNNLTSNESSIMKESMKTTVQHVSEISERQEIGGQELVEKNDEPDPKRRNTQMDLVDIPISSRFNTLKDRLIVKIISDVDILDDGYKWRKYGQKAIKGSPNPRSYYRCTTPSCIIRKHVERDPTDIATVITTYEGKHNHDVPPPTTKSLILAKASALRLRS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3603 244 SMART WRKY_cls 165 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3603 244 SMART WRKY_cls 23 81 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3603 244 MobiDBLite consensus disorder prediction 115 134 - -
Lja4g3603 244 Gene3D WRKY domain 12 82 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g3603 244 Gene3D WRKY domain 150 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g3603 244 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 18 94 - -
Lja4g3603 244 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 91 243 - -
Lja4g3603 244 ProSiteProfiles WRKY domain profile. 18 82 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3603 244 MobiDBLite consensus disorder prediction 114 134 - -
Lja4g3603 244 Pfam WRKY DNA -binding domain 166 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3603 244 Pfam WRKY DNA -binding domain 24 80 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3603 244 ProSiteProfiles WRKY domain profile. 160 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g3603 244 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 94 IPR044810 GO:0003700
Lja4g3603 244 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 91 243 IPR044810 GO:0003700
Lja4g3603 244 SUPERFAMILY WRKY DNA-binding domain 18 81 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g3603 244 SUPERFAMILY WRKY DNA-binding domain 158 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3603 Lja-Chr4 67387869 67388950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3603 20 79 WRKY Transcription Factor Family AT2G03340 47.541 4.38e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja4g3603 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3603 - - gmx:100802109 244.973