Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3597 ATGGCCGCCGGCGACCTCGCCGGAGATCGCACGCCGGAGCTTCTGCGTCTCATCCACGACATCACCGGAATCTGCACCGTCTCCTCCGACGCCTCGTTCAGGAAGGACTGCACCGATCTTGTTCGCCGGATCTCGCTGCTCACCCACTTGTTCGACGAGGTTAAGGACTTGAGCTCCGATTCGAGCTGCTCCGGTGCTGGTTCTGCTTCTGCCGTGGCTTCGTGGTCGTCTGATCTGGTTGTTGCTCTTCACTCCGCTAAGCGCTTGCTCTCTGTTGCTAGGAATTTTCGTTCCAATTGCTCTTCGGATGGATCGGCCAAGACCATTGTCTACCAATTTCAGTGCGTGACGTGGAAATTGGAAAAACTGCTAAGCCACTTACCATATGACGATTTAGACATATCAGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACACAATTAAGACGGGCCACGGAAAAATATGGGTATATGATTTCAAAAATGCCATCTTATGAATTATCCCAGCCCCTGGCTCGAGAAATTAGTCCGGCTCTTGGCAAATCCGTGATTGGGTTGCATAAACAAAACAGCTGTCCTGAAAATTTATCAGAACTAGACAGCATTCCTGAAAACAAAGGAGAGAAAAGTTGCAGTGCAAATGGAGCAGGATCTCGATTAGAAAGAACAAGGACCTTTTCTGTAGTCCCCTTATCGAATGTAACTATTGATCCTGACAGTCAAGGAATTTCTGAGAGAAAGAACCAACCTCAGATTAAGAAGCCTGAAGCAATTGTATTTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTGATGAGGGATCCTGTTATTGTGTCCACCGGTCAGACTTATGAGAGATCTTACATACAAAGATGGATAGATTGTGGACATCTAACGTGTCCAAAAACTCAGCAGAAGCTCGAACATTTCACCCTTACACCCAATTATGTTTTAAGGAGCCTTATTACTCAATGGTGTATGGAGCACAACATTGAGCAGCCAACAGGATTAACTAATGGCAAACTAAAAAAAAGTGATGGATCGTTCATAGATGTTACAGGTGACATAGCAGCCATCGAAGCTCTAGTCCGCAAGCTCTCGAGCCGGTCCATTGAAGAGCGCAGAGAAGCTGTTGCTGAAGTTCGATCACTGTCCAAACGGAGTACTGAAAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTCCTAGTCAACCTTTTGACATCAGAAGATGCATTGACACAAGACAATGCAGTTACTTCAATCCTCAACCTTTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCGTCCATTGTCCAAGTCCTCCGAGCCGGTACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTCTTTAGCTTGTCACTTGCTGATGAGAACAAAATAATAATTGGTGCCTCAGGGGCCATACCCGCTTTGGTAGAATTGCTCCAAAATGGGAGCTCTAGAGGGAAGAAGGATGCTGCAACAGCATTGTTCAATTTATGCATTTATCAAGGAAACAAGGGCAGAGCCATCAGGGCAGGGATCATCACAGCTTTGTTGAAGATGCTTACAGATACAAGCAAATCAATGATTGATGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGGTTGCAATAGTGAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTACGGACAGGATTGCCTCGCAATAAAGAGAATGCAGCTGCTATTTTACTTGCCTTGTGCAAGAAAGATGCTGAAAATCTTGCTTGTATAAGTAGACTTGGTTCTGTCATCCCTCTTACTGAACTTACTCGAACCGGTACTGAGAGGGCCAAACGAAAGGCTACCTCATTGTTGGAGCATCTTCGCAAGTTACAGCAGCTTTGA 1923 0.4524 MAAGDLAGDRTPELLRLIHDITGICTVSSDASFRKDCTDLVRRISLLTHLFDEVKDLSSDSSCSGAGSASAVASWSSDLVVALHSAKRLLSVARNFRSNCSSDGSAKTIVYQFQCVTWKLEKLLSHLPYDDLDISEEVKEQVDLVRTQLRRATEKYGYMISKMPSYELSQPLAREISPALGKSVIGLHKQNSCPENLSELDSIPENKGEKSCSANGAGSRLERTRTFSVVPLSNVTIDPDSQGISERKNQPQIKKPEAIVFPEDFLCPISLELMRDPVIVSTGQTYERSYIQRWIDCGHLTCPKTQQKLEHFTLTPNYVLRSLITQWCMEHNIEQPTGLTNGKLKKSDGSFIDVTGDIAAIEALVRKLSSRSIEERREAVAEVRSLSKRSTENRILIAEAGAIPVLVNLLTSEDALTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSSRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDTSKSMIDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKKDAENLACISRLGSVIPLTELTRTGTERAKRKATSLLEHLRKLQQL* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3597 640 Coils Coil 620 640 - -
Lja4g3597 640 SUPERFAMILY RING/U-box 261 335 - -
Lja4g3597 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 334 IPR013083 -
Lja4g3597 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 484 IPR000225 GO:0005515
Lja4g3597 640 Pfam U-box domain 262 332 IPR003613 GO:0004842|GO:0016567
Lja4g3597 640 Pfam Armadillo/beta-catenin-like repeat 473 511 IPR000225 GO:0005515
Lja4g3597 640 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Lja4g3597 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 483 525 IPR000225 GO:0005515
Lja4g3597 640 PANTHER U BOX DOMAIN-CONTAINING 17 637 - -
Lja4g3597 640 Coils Coil 135 155 - -
Lja4g3597 640 SMART arm_5 554 594 IPR000225 GO:0005515
Lja4g3597 640 SMART arm_5 390 430 IPR000225 GO:0005515
Lja4g3597 640 SMART arm_5 513 553 IPR000225 GO:0005515
Lja4g3597 640 SMART arm_5 472 512 IPR000225 GO:0005515
Lja4g3597 640 SMART arm_5 431 471 IPR000225 GO:0005515
Lja4g3597 640 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 17 637 - -
Lja4g3597 640 Gene3D - 341 639 IPR011989 -
Lja4g3597 640 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Lja4g3597 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Lja4g3597 640 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Lja4g3597 640 CDD RING-Ubox_PUB 265 307 IPR045210 -
Lja4g3597 640 SUPERFAMILY ARM repeat 360 634 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3597 Lja-Chr4 67256811 67259934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3597 14 639 U-box Gene Family AT1G23030 61.526 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3597 - - gmx:100815448 1025