Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3596 ATGAGGAAGCCTAATTGCTGTGATATCAAAGACATGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCATTGATTATATCAAGAAAAACCGCAAGATTTGTTGGCGTACACTCCCTCAAGCTGCAGGTTTACTTCGATGCGGTAAAAGTTGCAGGCTGAGATGGATAAACTATCTTCGGCCTGATCTTAAAAGGGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCTCTACTAGGAAACCGGTGGTCCTTAATAGCTGGGAGATTGCCTGGACGTACAGACAATGAAGTGAAGAACTATTGGAACTCTCATTTAAGAAGAAAGCTCATCAGCAAGGGTATTGATCCAAACAATCATCGTTTAACCCCCAAAATCCCTCCCGTGAATCAAAACCCACCCAATATGTCAGATAGTTCAAAATCTTCTGACTTGAAAATCATTAGCAAGAATGAGACAAGTAAAATCCATTATGTTGATATTAATTACAGTGAAGTCTCAAATGTTGCATGTGGTGAAGAAGAGTCATATTCACTGCCAGATTTAAATCTTGACCTCACTATGAGCATCCCTTCACCTTCACCAAGTGTTGCTGAAAATAATCTAAAACCAATTCATGAATTCATGAAGTCATCTACAATACACCATTTTGTTACCCCTCCAACACTTCTTCTATTTCAGTGA 702 0.3932 MRKPNCCDIKDMNKGAWSKQEDQKLIDYIKKNRKICWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLISKGIDPNNHRLTPKIPPVNQNPPNMSDSSKSSDLKIISKNETSKIHYVDINYSEVSNVACGEEESYSLPDLNLDLTMSIPSPSPSVAENNLKPIHEFMKSSTIHHFVTPPTLLLFQ* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3596 233 CDD SANT 69 112 IPR001005 -
Lja4g3596 233 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja4g3596 233 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 232 - -
Lja4g3596 233 CDD SANT 16 61 IPR001005 -
Lja4g3596 233 PANTHER - 2 232 - -
Lja4g3596 233 Gene3D - 14 66 - -
Lja4g3596 233 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja4g3596 233 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja4g3596 233 SMART sant 13 63 IPR001005 -
Lja4g3596 233 SMART sant 66 114 IPR001005 -
Lja4g3596 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja4g3596 233 MobiDBLite consensus disorder prediction 123 150 - -
Lja4g3596 233 Gene3D - 68 153 - -
Lja4g3596 233 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja4g3596 233 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja4g3596 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3596 Lja-Chr4 67203592 67205055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3596 1 219 MYB Transcription Factor Family AT2G16720 49.372 1.80e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g3596 Myb_DNA-binding 4.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3596 K09422 - gmx:100814923 325.094