Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3593 ATGGATGATGAAGTTGTTCAGCGCGTTTTCCATGAAGGAGGACGCGATTACTTCCAGCAACAACCTTCAACTTCATCGTCTTCTTCCTCCTCCATCCTCCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCGATCCAAGAACTTCGAGAGAAAAAGGATGGTCTTGTTACAGTTGGCATTGGTGGTCCAAGTGGTTCTGGTAAAACAAGCTTAACGGAAAAGGTGGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTATTGTGATGGAGTTGATGAAAGGAATGATCTGGATTCTATAGATTTTGATACCCTGATCAAGAATCTTGAGGATTTGACAACAGGTGATGATACATTAATTCCAGAGTTTGACTATCAGCAAAAGAGATGTATTGGCTTTAAAGCAATAAAGAGTACTTCATCTGGGGTGGTAATTGTTGATGGTACATATGCATTACATGCAAAACTAAGGTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGTCTTCTTTCTAAAGTCCGCTATGACATTGGAGATTCTTGTTCTCTGGATTACCTTATAGATAGCATTTTCCCGTTGTTTAGAAAACACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAATAGCTTTGTCTCATCGTTTAGAGAGGCAATCTACAAGGTTAAATGCCGAAGCGAGTCTTCAGAGGGGCATTCAGATTCTGTCTTTCAAGGAAATGAAACCCAAACAGATAATTTTATTGAAATGTACCTTAGACCACCTTCAGCTAGTGAAGAAGCAAGAATAAACGACTGGATCAAAGTGCGGCAGTCTGGAATTAGGTATTACTTATCACTTGGGGACCAGAGGATTGTTGACAAAAATTTCATAATCAGGCCTAAAGCAGAGTTTGAGGTTGGACGAATGACATTGGGTGGATTGCTGGCTCTTGGGTACAATGTTGTGGTTAGTTATAAACGGGCATCCACAACTGTCAATTATGGCAAGGTTTCAATGTCTTATGAAACCATTGATGCTCTTGGTGAGACATTCTCAGTGATGAGAGGAACTAATAGGAAGACTGTTGGAACAGAAGCTTTGAGGATGGGTATCAATGGACCTTGGATTACTAAATCCTACCTGGAACTGATTCTTGAGAGAAAAGGCGTACCCCGTCTTAGTACACCGCCACTTGTGTCTAATACAACTGTGATTGGTAGTCAAGAAACCGCAATCGTTGCACCAAAGCCAATTCGTCTTACTCCTAACCTTGTTACTGGGCTTGAGGATGTATCTCAGCCGTGGACTCGATCCCCAACTAAATCGAAAATAGAACCTGTTATGGCTGCATGGCATTTCATATCTTCTGAATCTTCCCAGCCTGACAACTCAGTACTAGATCCATCTTTCAGGGACAACATTAGGCTTGCTCCAATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCTGTTCAAGCAATACAAGCTTTGTTGGAGAATAAAGGTGTCCCAGTCATAGTCGGAATTGGAGGTCCTAGTGGGTCTGGAAAGACTAGTTTGGCTCATAAAATGGCAAATATCATTGGTTGTGAAGTAGTTTCTCTGGAAAGCTATTATAAACAAATAAAGGATTTTAAATATGACGACTTCAGCTCCCTTGATTTATCTTTGCTTACAAAGAATATTGATGACATACGAAATGGTCGAATAACAAAAGTACCTATATTTGACTTGGAAAGTGGTGCTCGGATTGGCTTCAAGGAACTAGAAGTTTCTAAAGATTGCGGAGTGATTATATTTGAAGGCGTGTATGCTTTGCATCCTGATATCCGAATATCACTCGACTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCACATTTGATTTCAAGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATTTCCCAAAATGAGATCATGATGAGAGTTTTTCCTATGTTCCAGCAGCTTATTGAGCCTCATCTTGTTCATGCACACCTTAAAATTCGAAATGACTTTGACCCTGTGCTTTCTCCTGAGAGTTCATTGTTTGTACTAAAGAGTAATAAAAAAGTAGCTTATCAAGATATTCTAGCAATTCTTGATCCAGCAAAGTTTTGCAGTTCTGTTCAGAAATTTATTGATATATATATACGGCTTCCTGGAATTCCTTCTAATGGAAAGTTGTCAGACAGTGATTGTATTCGAGTCAGAATATGTGAAGGCAGATTTGCATTACTTATACGTGAGCCTATCAGAGAAGGAAACTTCATAATTCAGCCTAAAGTGGATTTTGATATTGGCATTAGTACGGTTGCTGGTCTTCTTAACCTTGGATCTCCTGCTAAAGAAGAATTTGGTGTCCTTTTCTCTTTTTTGGATCGCCTACTGCCACCACCGACCGTCGCTGCAGCCAATGACGACTTATCTGGTTTTGCTTTCAGATCTGGAAGCGTTTTTCTTGAAATTGTGGCTATGCAACCATATGCCACATTACAACTGTTATTGGATTTGGCAAGTGTGGTATATTGA 2577 0.3974 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLTEKVASVIGCTVISMENYCDGVDERNDLDSIDFDTLIKNLEDLTTGDDTLIPEFDYQQKRCIGFKAIKSTSSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESSEGHSDSVFQGNETQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYNVVVSYKRASTTVNYGKVSMSYETIDALGETFSVMRGTNRKTVGTEALRMGINGPWITKSYLELILERKGVPRLSTPPLVSNTTVIGSQETAIVAPKPIRLTPNLVTGLEDVSQPWTRSPTKSKIEPVMAAWHFISSESSQPDNSVLDPSFRDNIRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQIKDFKYDDFSSLDLSLLTKNIDDIRNGRITKVPIFDLESGARIGFKELEVSKDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMRVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILAILDPAKFCSSVQKFIDIYIRLPGIPSNGKLSDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDIGISTVAGLLNLGSPAKEEFGVLFSFLDRLLPPPTVAAANDDLSGFAFRSGSVFLEIVAMQPYATLQLLLDLASVVY* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3593 858 CDD UMPK_like 65 227 - -
Lja4g3593 858 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 605 795 - -
Lja4g3593 858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 177 IPR027417 -
Lja4g3593 858 Gene3D - 64 244 IPR027417 -
Lja4g3593 858 Gene3D - 516 702 IPR027417 -
Lja4g3593 858 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 425 - -
Lja4g3593 858 PRINTS Uridine kinase signature 638 648 - -
Lja4g3593 858 PRINTS Uridine kinase signature 517 534 - -
Lja4g3593 858 PRINTS Uridine kinase signature 544 555 - -
Lja4g3593 858 PANTHER URIDINE KINASE 605 795 - -
Lja4g3593 858 SMART AAA_5 62 212 IPR003593 -
Lja4g3593 858 SMART AAA_5 516 660 IPR003593 -
Lja4g3593 858 Pfam Phosphoribulokinase / Uridine kinase family 66 224 IPR006083 GO:0005524|GO:0016301
Lja4g3593 858 Pfam Phosphoribulokinase / Uridine kinase family 519 684 IPR006083 GO:0005524|GO:0016301
Lja4g3593 858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 687 IPR027417 -
Lja4g3593 858 CDD UMPK_like 519 687 - -
Lja4g3593 858 PANTHER URIDINE KINASE 2 425 - -
Lja4g3593 858 PANTHER URIDINE KINASE 495 605 - -
Lja4g3593 858 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 495 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3593 Lja-Chr4 67150722 67172566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3593 512 675 PRT Gene Family AT1G55810 25.281 9.01e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3593 - - gmx:100778905 1401.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3593 4 67150722 67172566 Lja4g2047 4 21856146 21863571 PCT