Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3588 ATGGCAAAGCGTTTCCTCCCCAGCCTCAACCGCGTTCTCATCGAGAAGATTCTTCCTCCAACCAAAACCAGCGGCGGCATTCTTCTCCCTGAGAAATCTTCCCAGCTTAATTCAGGGAAGGTGATTGCAGTTGGACCCGGATCCCGAGACAGAGCTGGGAACTTGATTCCGGTGTCTGTCAAGGAAGGTGATCAGGTGCTCTTGCCGGAGTACGGTGGCTCCCAAATCAAGCTCGACGACAAAGAGTTTCTTTTGTTCAGGGATGAGGACATTTTGGGCATTCTGCGTGATTGA 294 0.517 MAKRFLPSLNRVLIEKILPPTKTSGGILLPEKSSQLNSGKVIAVGPGSRDRAGNLIPVSVKEGDQVLLPEYGGSQIKLDDKEFLLFRDEDILGILRD* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3588 97 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 97 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja4g3588 97 CDD cpn10 4 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja4g3588 97 Hamap Co-chaperonin GroES [groES]. 4 96 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja4g3588 97 SUPERFAMILY GroES-like 3 96 IPR011032 -
Lja4g3588 97 Pfam Chaperonin 10 Kd subunit 7 94 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja4g3588 97 SMART Cpn10_2 4 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja4g3588 97 PANTHER GROES-LIKE FAMILY PROTEIN 1 97 - -
Lja4g3588 97 Gene3D GroES chaperonin 1 97 IPR037124 GO:0006457
Lja4g3588 97 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja4g3588 97 PRINTS 10kDa chaperonin signature 82 95 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja4g3588 97 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lja4g3588 97 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3588 Lja-Chr4 67057439 67058186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3588 3 95 Calmodulin-binding Proteins AT5G20720 38.947 1.13e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3588 K04078 - gmx:100527505 169.474