Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja4g3580 | ATGGAAAACATTCTGGGTCTTCTCAAACTTCGTATCAAAAGAGGCTCAAATCTAAAACCTTGCGATACTCGTACCAGTGATCCATATGTTGTTGTCACTATGGCCGAACAGAAATTGAAAACTGGTGTTTTTAAAGATGACTGCAATCCTGAATGGAATGAAGAATTGACTCTTTATATCAGGGATGTCAACATTCTGATACATTTGACAGTTTGTGACAAAGACACTTTCACGGTTGACGACAAAATGGGCGAGGCAGATATAGACATAAAGCCGTATCTTCATTGTGTGAAGATGGGGTTGAGCGATCTCCCAGATGGCCATGTAATCAAGAAGGTTCAACCAGATAGGACTAACTGCCTCACTGAAGAGAGTAGCTGCGTATGGCGAAATGGAAAAGTCATCCAAGAGATGAGTTTAAGATTGAGGAATGTGAAGTCTGGCGAAGTATTTGTGGAAATTGAGTGGGTTGATATAACAGGTTCCAATGGTCTATCAGAGGTTGAGCTTTAG | 513 | 0.4094 | MENILGLLKLRIKRGSNLKPCDTRTSDPYVVVTMAEQKLKTGVFKDDCNPEWNEELTLYIRDVNILIHLTVCDKDTFTVDDKMGEADIDIKPYLHCVKMGLSDLPDGHVIKKVQPDRTNCLTEESSCVWRNGKVIQEMSLRLRNVKSGEVFVEIEWVDITGSNGLSEVEL* | 171 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja4g3580 | 170 | Gene3D | C2 domain | 4 | 164 | IPR035892 | - | |
| Lja4g3580 | 170 | Pfam | C2 domain | 7 | 92 | IPR000008 | - | |
| Lja4g3580 | 170 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 157 | IPR035892 | - | |
| Lja4g3580 | 170 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 167 | IPR044562 | - | |
| Lja4g3580 | 170 | PANTHER | CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN | 1 | 167 | - | - | |
| Lja4g3580 | 170 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
| Lja4g3580 | 170 | SMART | C2_3c | 7 | 102 | IPR000008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja4g3580 | Lja-Chr4 | 66974527 | 66978309 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja4g3580 | 38 | 166 | C2H2 Transcription Factor Family | AT1G70790 | 55.725 | 3.47e-47 | 149 |