Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3572 ATGGCTGTTGAAACTTCTGGTGGAGCAAACTTGTTATGTGGTTCTGATATTGGAAATGATGATGATGTTCCTGTCCAGATTTCTGATATGGGAGGAACATCTAGCAGCAAATCCTCACACAATTTGGTTAAGAAATCAAAGTCGTCTTCATATGATGATGATGATATTGCTTTTTCCTCCATAGTGAAAAAGACGGCTGTATCAGCTGATAAATCGTTATCCATGTTGAAGAAGTTCATAGATAAAGAACTTGCCTTGGTTGAGGAATGCCAAAGGAAGAGGCAAGTGGAAGAGCAGCGGTTGCACTCCCTGCAGACAAAAATTGAAGAATGTGTCTGCGATTTTGTGACCAAGGAAGCACAACACAGTTTGTTGGAGGACTTGCTCAGAGAGTGCGAGCTACAGCTCAAGACAAAAGAGGTAGAAATTCATCAAGTCATGCATAACATGAATAAAGAACAAGAAAGGAAGAAAGAGGAACTTGAGATTATTTTCCGAAAAGTTGCCCGATGTACTAAGGAACTCAAGACCAAAGAGGAAAAGCTTGATGCAATAAGCAAGTTAATTGATGGACAATCAAAAGAACTGGATAAGGTAATCTCAACAAGGGCTGCTCCGTGTGCTCAAATGAAGGACTTTGAGTCAATGAAGAAGCAACTTGATGGCCGGATTAAGGAGTTTAACTTCAAAGAAGAGGAATTTAGACGTCAAGTGAAGGTCATTGAATCAAATTTTGGAAGCCAAGCAAAGGACCTTGAGTCAAAAAGGAAGCAACTTGAAGAGCAACTAAAGGAGTTCAAGTTAAAAGAGAAACAACTAAAATGTCAAGAGAAGGAGCTTGAGTCAAAAAACAAGTATTTTGATAGCCTAGAGAAGGAGCTCAAATCACAAAAGAAGCAACTTGAAGATGAACCTGAACTGCTTGAAAATGAGATTCTAGTTGATCTTGAAGCAACATCGGATCCATCAAAAGTTGTTTTGGATATAATACAGAATCCCATTGTTTCACAGATCAAGAATGGAGATGATGCTGTAATTATGGACAGAAGCCACATCTTTCTGCTACAACAACTTTTGAGAATCTCACCACAAATTAAACCTCATGTAAGAGAAGACGCAATGAAGCTAGCACTTGATTTGAAAGCCAACATGAGAACAAGTACTGAAAATTCTTTGGAGGTTCTCGGCTTTGTACTCCTTTTGTCAATTTATGGATTGGTTCCTACCTTTGATGAATATGAAGTTTTAAAGCTTTTTGAATTTGCTGCTCAGCATAAGCAAGTTGTAGAGCTGTTTCAGACCCTGGGTTTTGTAGATAAAATCTCTGATTTTGTTCAGAAACTTATTAACAAACAGCAGTATATTGAAGCTGTTAGATTCATTTGTGCATTTAAGTTGGTGGACAAGAATCAACCAGTTGATCTCTTGCGAGAATATGTGCAGAATGCAAAACGGATTTCTGAGATCAGTTGCAAGAATACCAACTCTCTTGAAATCAAGGATAAGGCCAGAGATCATGAAATTGCCACTTTGACAAATGTTCTACAATGCATTTCAGACAACAACCTGGAATCTGAGGATCTTTTTGATGAGATTAAAGATCGCATTCTTGAGCTAAATAAGCAGAAGGACTGTTTATCTAAGATGGAAGAAGATTGGAAACCAAAGTTGGGTGTGGCTTTTGATAGCTTTGAGGATGCTTGGAAGTTTTGGGCTGATTATGGTGGGAGAGTTGGATTTGGAGCGAGAAAGCAATATACTCATCGGAAAAAAGATGGTTCAATTTCGTCTTGTAGATTTGTTTGTTGCAATGAAGGGTTGCGAAAGCCTGACAAACGTGATTATAAAACAATCAATGCAAGACCAGAGACCAGAACAGATTGTAAAGCAAGGTTGGGACTTAAGAATATGTGTGGGAAATTGATAGTGCATGACTTTATGGAGGAACATAATCATATTTTGTATCTACAAGAAACAACTCATATGTTGTCATCTCAAGGAAAAGTTTCAGAAGTTCAATGTCATCAAAATGATTTAGCAGATGACGCTGAGCTACACCGAAGTAAAGGTTCGGTGGAGTGCCAACTTAGCAAAAGAAGAAAAATTGAATAA 2112 0.3807 MAVETSGGANLLCGSDIGNDDDVPVQISDMGGTSSSKSSHNLVKKSKSSSYDDDDIAFSSIVKKTAVSADKSLSMLKKFIDKELALVEECQRKRQVEEQRLHSLQTKIEECVCDFVTKEAQHSLLEDLLRECELQLKTKEVEIHQVMHNMNKEQERKKEELEIIFRKVARCTKELKTKEEKLDAISKLIDGQSKELDKVISTRAAPCAQMKDFESMKKQLDGRIKEFNFKEEEFRRQVKVIESNFGSQAKDLESKRKQLEEQLKEFKLKEKQLKCQEKELESKNKYFDSLEKELKSQKKQLEDEPELLENEILVDLEATSDPSKVVLDIIQNPIVSQIKNGDDAVIMDRSHIFLLQQLLRISPQIKPHVREDAMKLALDLKANMRTSTENSLEVLGFVLLLSIYGLVPTFDEYEVLKLFEFAAQHKQVVELFQTLGFVDKISDFVQKLINKQQYIEAVRFICAFKLVDKNQPVDLLREYVQNAKRISEISCKNTNSLEIKDKARDHEIATLTNVLQCISDNNLESEDLFDEIKDRILELNKQKDCLSKMEEDWKPKLGVAFDSFEDAWKFWADYGGRVGFGARKQYTHRKKDGSISSCRFVCCNEGLRKPDKRDYKTINARPETRTDCKARLGLKNMCGKLIVHDFMEEHNHILYLQETTHMLSSQGKVSEVQCHQNDLADDAELHRSKGSVECQLSKRRKIE* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3572 703 Coils Coil 87 107 - -
Lja4g3572 703 PANTHER POLYMERASE RPB1 CARBOXY-TERMINAL REPEAT PROTEIN, PUTATIVE-RELATED 67 544 - -
Lja4g3572 703 Pfam FAR1 DNA-binding domain 569 654 IPR004330 -
Lja4g3572 703 Coils Coil 168 188 - -
Lja4g3572 703 Coils Coil 136 156 - -
Lja4g3572 703 MobiDBLite consensus disorder prediction 28 45 - -
Lja4g3572 703 Pfam Frigida-like protein 306 544 IPR012474 -
Lja4g3572 703 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 67 544 - -
Lja4g3572 703 MobiDBLite consensus disorder prediction 23 51 - -
Lja4g3572 703 Coils Coil 242 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3572 Lja-Chr4 66826388 66832742 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja4g3572 Frigida 3.4e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3572 - - lja:Lj4g3v0654370.1 1032.32