Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3555 ATGAGTGTAGGAGACAAGCAAAAAATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGCAGAAGGTGTAAGCTCTCAAAAAGATAGCTTTCCTGAAACTCTTCTTGACCCACAACGACAATCACTTATGGTTCCAGAGAACACCACAAACAACAACAACAATATCATGGATAACCATTTGGTGAAAGAGGTCATTGATGCCTCTCCCTATCAGCAATCCACCTGGGACCCTAATGTTCAAGAATTACAAGATATGAGCTATGCCAACCACCAAGAACAACAATTTCAGCATATTGATGCACAAAACTACTGCCAAAGCTACAACCCTTCTTCCATACTGGACCCTTCTTACCCTTCACCAGATCTCCTAAACTTTCTCCACTTGCCCACATGCTCAGCTTCATCTTTACTCACTAATCCACCCAACATTTGTATCTCAAACCCAACTCAGAGGACACCCAATTTCCAGAACTCAATGACCTTTCTAGGAGAACTTCCAATGGGACCAGACAACACAAGTGCCTCCTCAGTTCTATATGATCCTCTATTTCATTTGAACCTGCCTCCACAGCCTCCAGCCCTCAGAGAGCTGTTCCAATCTCTCCCCCGAGGCTACAGGTTGCCAACCAGCTCCAGGGACGATTCACTTTTCGGTGGAGGCGATGAGATGGAGGGAGATGGGAGTCAGCTTGACATGGGAGTGCTGGAATTCAATAGGGGCACAACTTCTGTTGGCAAAGGAAGGGAAGGAAAAGGTGCCAAACCTTTTGCAACTGAGAAAGACAGAAGAGAGCAGCTGAATGGAAAATACAAAATCTTGAGGAGTCTTATCCCTAGCCCCACCAAGCCTGATAGAGCCTCTGTGGTGGGTGATGCCATTGATTATATAAAAGAGCTGATTAGAACAGTCAATGAGCTCAAATTATTGGTGGAGAAGAAAAGACATGAGAGGGAGAGGTGCAAGAGGCCAAAAAATGAAGAGGATGCTGAGGAAAGCTGTAACATCAAGCCTTTTGGTGATCCAGATGGGTACATAAGGACCTCATGGCTACAGAGGAAATCCAAAGAGAGTGAGGTCGATGTCCGGATCATCGACGATGATGTCACAATTAAATTCTTTCAGAGGAAGAAGATTAACTGCCTGCTGTTTGTGTCAAAGGTTCTGGATGAACTTCAATTGGAACTTCACCATCTTGCAGGTGGACATGTTGGTGAATATTGGAGTTTCTTGTTCAATAGCAAGATAACTGAAGGCTCATCAGTTTATGCAAGTGCCATAGCCAACAGGGTGATTGATGTTTTGGACACTCAATATGCTGCAGCAGTTCCACAGACAAGTAGCTATTAG 1353 0.4457 MSVGDKQKMHEQTGCFDPNTMAEGVSSQKDSFPETLLDPQRQSLMVPENTTNNNNNIMDNHLVKEVIDASPYQQSTWDPNVQELQDMSYANHQEQQFQHIDAQNYCQSYNPSSILDPSYPSPDLLNFLHLPTCSASSLLTNPPNICISNPTQRTPNFQNSMTFLGELPMGPDNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYRLPTSSRDDSLFGGGDEMEGDGSQLDMGVLEFNRGTTSVGKGREGKGAKPFATEKDRREQLNGKYKILRSLIPSPTKPDRASVVGDAIDYIKELIRTVNELKLLVEKKRHERERCKRPKNEEDAEESCNIKPFGDPDGYIRTSWLQRKSKESEVDVRIIDDDVTIKFFQRKKINCLLFVSKVLDELQLELHHLAGGHVGEYWSFLFNSKITEGSSVYASAIANRVIDVLDTQYAAAVPQTSSY* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3555 450 Gene3D - 253 314 IPR036638 GO:0046983
Lja4g3555 450 SMART finulus 258 307 IPR011598 GO:0046983
Lja4g3555 450 MobiDBLite consensus disorder prediction 19 33 - -
Lja4g3555 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 320 IPR036638 GO:0046983
Lja4g3555 450 PANTHER TRANSCRIPTION FACTOR BHLH91 9 447 IPR045895 GO:0006355|GO:0048658
Lja4g3555 450 MobiDBLite consensus disorder prediction 1 33 - -
Lja4g3555 450 PANTHER TRANSCRIPTION FACTOR BHLH91 9 447 - -
Lja4g3555 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983
Lja4g3555 450 CDD bHLH_AtMYC1_like 257 321 IPR045896 -
Lja4g3555 450 Pfam Helix-loop-helix DNA-binding domain 258 301 IPR011598 GO:0046983
Lja4g3555 450 Coils Coil 298 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3555 Lja-Chr4 66635989 66637533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3555 9 448 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 38.477 1.15e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g3555 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3555 - - gmx:100782512 657.521