Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3539 ATGCTAAACTCAATCTCAAAACTAAGTCCTCTTGCAAATACTCTTGTTTTTCTTGTGACCCTTTACTTAGCCACGGCCAATGCAGCAGCAGCCTCCTATAATGTGGTCAGTTTCGGAGCCAAACCGGACGGCCGCACCGATTCCACAAAGGCCTTCCTAAGTGCATGGAACAGAGCTTGCACCTCGCGCAACCCCGCGGCAATTTATGTGCCGCAGGGGCGGTTCTTGCTTGGAAGTGCAACCTTTCAAGGAAAATATTGTAAAGGTGTTTCAATTACTATTGATGGCACCTTGGTGGCTCCCTCGGATTACCGCGTGATCGGAAAATCCGAGAACTGGTTGCTGTTCGAGAATGTTGATGGAGTTTCTATTCATGGTGGGGTGCTTGATGGCCAAGGCAAGCCCTTGTGGAATTGCAAGAACTCAGGCCATGGTAATTGCCCAACAGGAGCCACGACATTGGAATTCAAAAACTCCAAAAACATTGTTGTTTCTGGGTTGACCTCAATCAATAGTCAACTATTCCACATACTATTTCGAGAATGCCAAAATGTGAAAATGCAAGGTGTGAAGATCATGGCCCCTGGAAACAGTCCTAACACTGATGGTATTCATGTCCAAATGTCCTCCCACGTAACCATCACCAACTCCAAAATTCAGACCGGAGATGATTGCATTTCAATAGGACCTGGCACCTCTAACTTGTGGATTGAAAACATTGCATGTGGACCAGGCCATGGAATAAGCATTGGAAGCTTAGGATGGGATTTGAACGAACCAGGTGTGCAAGATGTGACAGTTAAAACGGTTACATTCACAGGCACTCAGAATGGTGTTAGAATAAAATCTTGGGGGAGACCCACTAATGGGTTTGTGAGGAACGTGCTTTTCCAAGATTTAATAATGGTCAATGCCCAAAACCCCATTATAGTTGACCAAAATTACTGCCCCAATAACAAGGGCTGCCCTCGTCAGGCCTCTGGAGTGAAAATCAGTGATGTAACATACAAAGACATTCACGGAACATCAGCAACACCAGTTGCCATAAAATTTGATTGCAGTTCTAAGTATCCATGCAATGGAATAAAGTTGCAGGAAGTGAAGCTCACATATAAGAGCCAAGATGCCCAAGCTTCGTGTAACCATGCAGGTGGAGCAACTATGGGTACAGTTCAGCCAGAGAGTTGCTTGTAG 1194 0.4539 MLNSISKLSPLANTLVFLVTLYLATANAAAASYNVVSFGAKPDGRTDSTKAFLSAWNRACTSRNPAAIYVPQGRFLLGSATFQGKYCKGVSITIDGTLVAPSDYRVIGKSENWLLFENVDGVSIHGGVLDGQGKPLWNCKNSGHGNCPTGATTLEFKNSKNIVVSGLTSINSQLFHILFRECQNVKMQGVKIMAPGNSPNTDGIHVQMSSHVTITNSKIQTGDDCISIGPGTSNLWIENIACGPGHGISIGSLGWDLNEPGVQDVTVKTVTFTGTQNGVRIKSWGRPTNGFVRNVLFQDLIMVNAQNPIIVDQNYCPNNKGCPRQASGVKISDVTYKDIHGTSATPVAIKFDCSSKYPCNGIKLQEVKLTYKSQDAQASCNHAGGATMGTVQPESCL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3539 397 PANTHER PUTATIVE-RELATED 7 396 - -
Lja4g3539 397 SMART pbh1 182 208 IPR006626 -
Lja4g3539 397 SMART pbh1 326 366 IPR006626 -
Lja4g3539 397 SMART pbh1 262 283 IPR006626 -
Lja4g3539 397 SMART pbh1 209 230 IPR006626 -
Lja4g3539 397 SMART pbh1 232 252 IPR006626 -
Lja4g3539 397 SMART pbh1 292 313 IPR006626 -
Lja4g3539 397 Gene3D - 20 396 IPR012334 -
Lja4g3539 397 SUPERFAMILY Pectin lyase-like 17 397 IPR011050 -
Lja4g3539 397 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Lja4g3539 397 PANTHER - 7 396 - -
Lja4g3539 397 Pfam Glycosyl hydrolases family 28 60 382 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3539 Lja-Chr4 66407860 66410140 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3539 11 397 Glycoside Hydrolase AT2G43870 62.468 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3539 K01184 - gmx:100806846 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3539 4 66407860 66410140 Lja4g3539 4 66407860 66410140 ECH