Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3537 ATGAAAGAGAGTGGTAGGACGAAGCAGGGTGTGCCCTCTCCCTGTGCTGCATGCAAGCTCCTCCGTAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCCTATTTCCCTGCAGATGAGCCCCAGAAGTTTGCTAATGTGCACAAAGTATTTGGTGCCAGCAATGTCAACAAGATGCTTCAGGACTTACCAGAGCATCAGAGAGGGGATGCTGTGAGCAGCATGGTGTATGAGGCAAATGCAAGAGTGAGGGACCCTGTGTATGGCTGTGTAGGTGCCATTTCATCTCTTCAGCAACAGATTGATCTGCTTCAGACCCAATTGGCAGTAGCTCAGGCTGAAGCTGTGCACCTCAGGGTGCGCCAGAGTACTGCATCATCTCTCTGGAACCCATGTCATGGCCCAACTAGCCCCACCTACACTAGTGTCCCTCCATCATCCAAGATCCTTGAATCTCAAGCCAAACATGTTTTTGACATGGACATGATGGTGGACCATGCTGGATATGGTGGGGATTCCATGTGGTAA 525 0.5048 MKESGRTKQGVPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAVAQAEAVHLRVRQSTASSLWNPCHGPTSPTYTSVPPSSKILESQAKHVFDMDMMVDHAGYGGDSMW* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3537 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 160 - -
Lja4g3537 174 Coils Coil 93 113 - -
Lja4g3537 174 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Lja4g3537 174 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Lja4g3537 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3537 Lja-Chr4 66358531 66362334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3537 1 174 AS2 family AT1G31320 72.727 5.91e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja4g3537 LOB 4.6e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3537 - - gmx:100306560 254.988