Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3535 ATGGAGTTAGAGGTACATGCGGTGGGAGGCATAGACAACTGTTTCGTTTCCCTTCCCTTACCTCTAATCCAAACCCTACAATCCACTCGATCTTCTCCACTCCCTCATATTCTCGCTCTCGAGCTTCGTTCTCTCACTCACCCACCACACTCATGGTTCCTCGCTTGGTCCGGTGCCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGCCATTGAGGTTTCGCAACAATTTGCTGAATGCGTTTCGTTGCCGAATCACGCTGCAGTTCAGGTCAAAGTCGCTTCGAATGTTCCGCATGCTTCTCTGGTCACGATCGAGCCGGATACCGAAGATGACTGGGAAATATTGGAGCTTAACTCTGAACAAGCTGAAGCTGCAATCCTCAATCAGATCAGGATTGTACATGAAGGGATGAGATTTCCTTTGTGGTTGAATGGTCATACTGTCATCACATTTCATGTGGCTTCTGTTTTCCCGAAGAATGCGGTGGTACAACTCATGCCAGGAACAGAAGTTGCTGTTGCTCCCAAAAGGCGTAAAAGGATTTCGGATTCAGCAGGGGATTCACATCTGGAATCCTGTAATAAAGAGCATACTGCAAAGATGTTGCTCCGTGTACAAGATCCAGATGGGTTATGCTCTACCAGTACTCATGTCAAAGGTGTTGAGCTCCATGTAGGGCTTACTTCTGTTGCTTTTGTACATCCAGAAACAGCCAAGCTCTTCTCATTTAATATGCTTCAGTTGGTTTCAATAGTGCCAAGAGTATCCAAGGAGAATGTTAATATTCCCAGAACCAATATTATGAAAGCCAAAGGTGGTTCAGCATTTAATGAAGTTGAGAATGGAAGTACTGACAAGAAAGAGTATCGACAGGCACTTGTTCATCTGTTGATTTCAGAATCTGTGGCTGAAGGGCATGTTATGGTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTGGCCTGCATTCATGGGTTTATTTAAAGGCATGTGATGTTATTTTGGAAAAAAGTATTCCTTCCATCTCTATTTGTCATTGCCAATTCAAACTATTAAGAAAGGAGATGGCTGTTGAGAAAGATGGTCTAGAAGTTTTACATGGCCAGAAGAATCACAGTGATGAAAAATTGCATGCAAAAGCTACTTCAGGTGTCATTGTGGATACTTTAGATTGGTCAATCCAACATGCATTTACTGCAGCTCTTTCTGATGAATCCGATTCCAAAGCAGAAGAAGAGGCTGCAAAGCAGTTTCAGAATCAAAAGGGATTACAAAGTCTTGTAAAACTATGGTATATTGCACAGCTTGAGGCAATTACTTCCATTACGGGTATGGAGGTTAATTCATTGGTTATGGGCCGTAACACCTTGCTTCAATTTGAATTAAGCTGTTACAAGCTTGGCAGTGATGGAAAGGTCCAGCTGGCTGATAATTCTTCAGAGAATAGTGGCAAGGCAGCTGAAATGTTATTTTTATTGACCTTCGGTGAAGAACATCTGCATCACAGGAGACTAAACGCATACGAAGTTGCTCTTGGAGGAAAACTCAATAACATCAATGATGGGGATTTTAAGCTTTTTGGACAGATGAAACTTGGGGATCCTGTGTCTATTAATTCTGTAGAAGAGAGAGCCCCTGAAGACCCCGTTAGCTCAAATGTATCTTCTCTTGACTGGATGGAGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTATTATCTTCAGCATCTGGTTTGTGGTTTGGCTCATACAACTTGCCACTTCCTGGACATGTTCTAATATATGGACCTCCAGGCTCTGGGAAGACTATATTAGCAAGGACTTTGGCAAAATCCCTTGAGAATCATAAAGACATCTTAGCACACATAATTTTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCCAATTATTCGTCAAGAAATTGCGAACCATATAAATGAAGCCATAAACCATGCACCTTCCATTGTCATCTTTGATGATTTGGATAGCATAGTTTCTACACATGACTCAGAGGGATCTCAGCCTTCAACATCTGTTGCTGGACTCTCAGATTTTCTGGTTGATATCATGGATGAATATGGCGAGAAGAGGCAAAAATCATGTGGATTTGGACCAATAGCCTTCTTAGCTTCCATTCAATCCCTGGAGAGCATACCACAATCTTTGAGCTCTTCAGGACGCTTTGACTTTCACATAAGGCTGCCCGCTCCTGCAGCTTCCGAGCGCAAGGCTATGTTAAAACATGAAATACAAAGGCGTCACTTGCAATGTGATGATGACGTCCTGCTTGATGTTGCTGTAAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTAGTTGACAGAACTGTACATGCTGCTGTTTGCCGTTTTCTTCCAGCTAATGCGACTATTTATGAGCATGAGAATCCAGCTTTACTAAGGGAGGATTTCTCTCAGGCAATGCATGATTTTCTTCCAGTTGCAATGCGTGACATCACAAAATCTGCTTCTGATGATGGCCGTTCTGGATGGGATGATGTGGGTGGTCTTGTTGATATACAAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAATTTCCAAAAACTTTTGCACAAGCACCATTGAGGTTACGTTCGAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCGCTTCGATTCATTTCAGTTAAAGGGCCAGAGCTGTTAAACAAGTACATTGGTGCTTCTGAGCAAGCTGTTAGGGATGTATTCTCTAAGGCAACTGCTGCGGCTCCATGCCTGCTCTTTTTTGATGAATTTGATTCTATTGCTCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGTGTTGTTAATCAATTTTTGACCGAGTTAGATGGTGTTGAGATTTTAACTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCGGATTTACTTGATGCAGCACTATTGAGACCGGGTAGATTAGATCGGCTTCTGTTTTGTGACTTTCCATCTTGGCATGAGAGATTGGAAATCCTTACAGTACTTTCTAGAAAGTTACCAATGGCCAGTGATATTGATTTGGGTACTGTAGCTAATATGACTGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTTCTCTCAGATGCGCAGCTTGCAGCAGTTCACGATATTCTAGACAATGTTGACGCCTCTAGGCCATTGAAAACACCAGTGATTACTGATGCTCTTCTGAAGCTCACCGCATCCAAGGCTAGACCATCTGTTTCAGAAGAAGAGAAAAGAAGACTCTACAGTATTTATCACCAGTTTCTGGATTCAAAGAGATCCGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 3408 0.4252 MELEVHAVGGIDNCFVSLPLPLIQTLQSTRSSPLPHILALELRSLTHPPHSWFLAWSGATSSSSSSSSSSAIEVSQQFAECVSLPNHAAVQVKVASNVPHASLVTIEPDTEDDWEILELNSEQAEAAILNQIRIVHEGMRFPLWLNGHTVITFHVASVFPKNAVVQLMPGTEVAVAPKRRKRISDSAGDSHLESCNKEHTAKMLLRVQDPDGLCSTSTHVKGVELHVGLTSVAFVHPETAKLFSFNMLQLVSIVPRVSKENVNIPRTNIMKAKGGSAFNEVENGSTDKKEYRQALVHLLISESVAEGHVMVAKSLRLYLRAGLHSWVYLKACDVILEKSIPSISICHCQFKLLRKEMAVEKDGLEVLHGQKNHSDEKLHAKATSGVIVDTLDWSIQHAFTAALSDESDSKAEEEAAKQFQNQKGLQSLVKLWYIAQLEAITSITGMEVNSLVMGRNTLLQFELSCYKLGSDGKVQLADNSSENSGKAAEMLFLLTFGEEHLHHRRLNAYEVALGGKLNNINDGDFKLFGQMKLGDPVSINSVEERAPEDPVSSNVSSLDWMEKTASDVINRMLVLLSSASGLWFGSYNLPLPGHVLIYGPPGSGKTILARTLAKSLENHKDILAHIIFVSCSKLALEKVPIIRQEIANHINEAINHAPSIVIFDDLDSIVSTHDSEGSQPSTSVAGLSDFLVDIMDEYGEKRQKSCGFGPIAFLASIQSLESIPQSLSSSGRFDFHIRLPAPAASERKAMLKHEIQRRHLQCDDDVLLDVAVKCDGYDGYDLEILVDRTVHAAVCRFLPANATIYEHENPALLREDFSQAMHDFLPVAMRDITKSASDDGRSGWDDVGGLVDIQNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDVFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMASDIDLGTVANMTEGFSGADLQALLSDAQLAAVHDILDNVDASRPLKTPVITDALLKLTASKARPSVSEEEKRRLYSIYHQFLDSKRSVAAQSRDAKGKRATLA* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3535 1135 Pfam ATPase family associated with various cellular activities (AAA) 882 1009 IPR003959 GO:0005524|GO:0016887
Lja4g3535 1135 Pfam ATPase family associated with various cellular activities (AAA) 595 740 IPR003959 GO:0005524|GO:0016887
Lja4g3535 1135 Gene3D - 98 178 - -
Lja4g3535 1135 SUPERFAMILY ADC-like 10 95 IPR009010 -
Lja4g3535 1135 Gene3D - 552 742 IPR027417 -
Lja4g3535 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1106 IPR027417 -
Lja4g3535 1135 Pfam AAA+ lid domain 1034 1072 IPR041569 -
Lja4g3535 1135 CDD AAA 874 1011 - -
Lja4g3535 1135 Pfam Peroxisome biogenesis factor 1, N-terminal 104 177 IPR015342 GO:0005524|GO:0005777|GO:0007031
Lja4g3535 1135 Gene3D - 743 822 - -
Lja4g3535 1135 Gene3D - 843 1105 IPR027417 -
Lja4g3535 1135 Gene3D - 1013 1092 - -
Lja4g3535 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 821 IPR027417 -
Lja4g3535 1135 SMART AAA_5 591 743 IPR003593 -
Lja4g3535 1135 SMART AAA_5 878 1014 IPR003593 -
Lja4g3535 1135 PANTHER - 3 1132 - -
Lja4g3535 1135 SUPERFAMILY Cdc48 domain 2-like 99 177 IPR029067 -
Lja4g3535 1135 PANTHER AAA-FAMILY ATPASE 3 1132 - -
Lja4g3535 1135 ProSitePatterns AAA-protein family signature. 982 1000 IPR003960 GO:0005524|GO:0016887
Lja4g3535 1135 CDD AAA 589 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3535 Lja-Chr4 66328487 66345736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3535 595 798 Calmodulin-binding Proteins AT3G56690 27.962 5.91e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3535 K13338 - gmx:100803882 1911.35