Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3533 ATGAATGTGACTGTGAGTAACCCTTTGGTGAGCCATGATGTTGCCGGAGACCATTTTCCGGTGGGCATGCGTGTTCTTGCCGTTGACGGCGACCAAGCTTGTCTTAGAGTGTTGGAGAACCTTCTTCGCCAATGCAACTATAATGTGACTACTACAACTCACTCAATTATGGCTCTTGAAATTTTGAGGAGGAACAGAAATAACTTTGACCTGCTGATTAGTGCTCTAAATAAGCCAGACATGGATGGATTTCAACTCCTTAAGCAAATCGGACTTGAAATGATGGACATACCTGTTATAATGTTATCAGAACACAGTGACAAAGAGTTGGTGATGAGTTGTGTTACTCACGGCGCTTGTAATTATATGCTGAAACCTGTTCGTATGGAAGAGATGAAGAACATATGGCAGCATGTAGTGCGCAGGAAGATGATTGGTTGCAGTGATCAGAATCTAGCTGTCAATAACGAGAAAACCTGCAATGTTGCTGGAGAAGGCAGTAGTCATGGCGGCACCGTATCAGAAAATAGAGGTCAGAAAAGGAAGGAACTAAGTGAGGATGAGAAAGTAAAAGGAGATGATGAACAATCATCTCGAAAGAAGGCTCGTTTGGTTTGGACGGCTGATTTGCATTCAAAATTTGTTGCTGCAGTTCAGCAACTGGGTTTTGAAAAGGCTGTTCCTAAGAGAATACTTGCATTGATGAATGTTGAAGGACTTTCAAAGCATCATGTAGCAAGTCATCTGCAGAAATTTAAACTCGGTCTCAAAAAGTCACATAATCCGGCTAGCTTGAACTTGGGAGGAAGCAGTGGTTCTTATCCACTCGTCAAGCCTATTCAGTCTGCAAATCATAGCTCAAATTCTATATTTCATTATAATGCAACTCAGTTATCTAATTTTTCTGAAGACTTGTCTCCATTGAGTGAGGTTAATGATGATCAACTTGCTGACCAAAGCTTGAAGTTTTGCTCCTCTGGTTCTGGTGACTTTTCTGCCACCAGTGGTGTTGCTGATCCTATACAGAATGCTAGAGCTGATGGGATGCAGAGCAGTTTTTGGGAGCAAATCTTACTTTGGGAATCTATTTAG 1092 0.4176 MNVTVSNPLVSHDVAGDHFPVGMRVLAVDGDQACLRVLENLLRQCNYNVTTTTHSIMALEILRRNRNNFDLLISALNKPDMDGFQLLKQIGLEMMDIPVIMLSEHSDKELVMSCVTHGACNYMLKPVRMEEMKNIWQHVVRRKMIGCSDQNLAVNNEKTCNVAGEGSSHGGTVSENRGQKRKELSEDEKVKGDDEQSSRKKARLVWTADLHSKFVAAVQQLGFEKAVPKRILALMNVEGLSKHHVASHLQKFKLGLKKSHNPASLNLGGSSGSYPLVKPIQSANHSSNSIFHYNATQLSNFSEDLSPLSEVNDDQLADQSLKFCSSGSGDFSATSGVADPIQNARADGMQSSFWEQILLWESI* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3533 363 MobiDBLite consensus disorder prediction 163 198 - -
Lja4g3533 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 257 IPR017930 -
Lja4g3533 363 SMART REC_2 23 136 IPR001789 GO:0000160
Lja4g3533 363 SUPERFAMILY Homeodomain-like 199 258 IPR009057 -
Lja4g3533 363 ProSiteProfiles Response regulatory domain profile. 24 140 IPR001789 GO:0000160
Lja4g3533 363 MobiDBLite consensus disorder prediction 175 198 - -
Lja4g3533 363 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 267 IPR045279 GO:0009736
Lja4g3533 363 Gene3D - 197 259 - -
Lja4g3533 363 CDD REC_typeB_ARR-like 25 140 - -
Lja4g3533 363 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 201 254 IPR006447 GO:0003677
Lja4g3533 363 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 267 - -
Lja4g3533 363 Pfam Myb-like DNA-binding domain 205 252 IPR001005 -
Lja4g3533 363 Gene3D - 22 159 - -
Lja4g3533 363 PIRSF RR_ARR_type-B 6 361 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lja4g3533 363 SUPERFAMILY CheY-like 22 145 IPR011006 -
Lja4g3533 363 Pfam Response regulator receiver domain 25 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3533 Lja-Chr4 66320790 66322612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3533 17 258 Response Regulator Gene Family AT2G25180 57.661 3.93e-86 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja4g3533 Response_reg 1.2e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3533 - K14491 lja:Lj4g3v0668260.1 727.628