Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3532 ATGTTGGGTGGGCTTTACGGTGATCTACCACCACCCTCTTCGGCGGAGGAAGACAAACCAACCACCAATGTCTGGTCCTCCAGCACCAAGATGGCCCCCGCCACCCTCCGCAAACCGGCCTTCACACCTCCCCACACCATTCCCAGATCGCAGACCAAACCCAAACCCACGGTCACCAGAACGGTGGTTTCCACCGCACCGTCACCTGTGCCGGCCCCGGATGATGCCGTCCAACCTGCCCTGGTGGGTGTCCAGTCCACGGTGATGGAGGAGTACGACCCGGCCAGGCCGAACGACTACGAGGAGTATCGGAGGGAGAAGAAGAAGAAGGCGAGGGAGGCGGAGGTGATGAGGGAGCTGGAGAGGCGGCGGCAGGAGGAAGAGGAGGAGGAAGAGAAGAGGGAGAAGGAGAGGGAGAGGCAGAGAGAGAGGGATAGTGATTCTAGGTTGAATATTTCTGGTGAGGAGGCGTGGAGGAGGAGGGCGGCGATGGGTGGTGGCGGTGGCGGTGGCGGTGGTGGGAGCAGCGGTGGGACGGTACCGAGGTCGCCGTCTCCGCCGCCAGGGAATGGTGGGGATGGATTTAGTATTGGGAAGTCGGAGACGGGAGGGTTGGGGGTTGGTGCAGGTGGGCAGATGACTGCGGCGCAGAGGATGATGGCGAAGATGGGGTGGAAGCAAGGGCAAGGGCTTGGGAAGCAGGAGCAAGGGATCACCACGCCATTGATGGCGAAGAAAACGGATAGGAGAGCTGGGGTTATTGTCAATGCCAGTGACAATAGCAAGAAAGTGAAGAGTGTTAACTTCAATGGGGTGCCTACCAGGGTGCTGCTTCTTAGGAACATGGTGGGGCCTGGTGAGGTAGATGATGAGCTGGAAGACGAGGTAGGATCAGAATGCGCCAAGTACGGGACAGTGACTCGAGTTTTGATATTTGAGATAACGGAGCCGAATTTCCCCGTTGATGAAGCAGTAAGGATTTTTGTGCAGTTTGAGAGATCCGAAGAAACAACGAAAGCGTTAATTGACCTTGATGGTAGGTTCTTTGGGGGTAGAGTAGTGCGCGCCACATTTTATGACGAGGATAAGTTTGGAAAGAATGAGTTGGCTCCAATGCCTGGAGAAATTCCTGGCTTCACCTGA 1143 0.5669 MLGGLYGDLPPPSSAEEDKPTTNVWSSSTKMAPATLRKPAFTPPHTIPRSQTKPKPTVTRTVVSTAPSPVPAPDDAVQPALVGVQSTVMEEYDPARPNDYEEYRREKKKKAREAEVMRELERRRQEEEEEEEKREKERERQRERDSDSRLNISGEEAWRRRAAMGGGGGGGGGGSSGGTVPRSPSPPPGNGGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNSKKVKSVNFNGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALIDLDGRFFGGRVVRATFYDEDKFGKNELAPMPGEIPGFT* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3532 380 PIRSF SPF45 3 376 IPR040052 GO:0045292
Lja4g3532 380 Coils Coil 100 146 - -
Lja4g3532 380 SMART rrm2_1 276 357 IPR003954 GO:0003676
Lja4g3532 380 Gene3D - 271 369 IPR012677 -
Lja4g3532 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 361 IPR000504 GO:0003723
Lja4g3532 380 ProSiteProfiles G-patch domain profile. 212 258 IPR000467 GO:0003676
Lja4g3532 380 SMART G-patch_5 210 256 IPR000467 GO:0003676
Lja4g3532 380 MobiDBLite consensus disorder prediction 94 156 - -
Lja4g3532 380 SUPERFAMILY RNA-binding domain, RBD 277 363 IPR035979 GO:0003676
Lja4g3532 380 MobiDBLite consensus disorder prediction 1 211 - -
Lja4g3532 380 MobiDBLite consensus disorder prediction 16 33 - -
Lja4g3532 380 CDD RRM_UHM_SPF45 273 369 IPR034653 -
Lja4g3532 380 MobiDBLite consensus disorder prediction 45 66 - -
Lja4g3532 380 Pfam G-patch domain 215 254 IPR000467 GO:0003676
Lja4g3532 380 PANTHER SPLICING FACTOR 45 SPF45 1 371 IPR040052 GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3532 Lja-Chr4 66316173 66320167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3532 218 253 C2H2 Transcription Factor Family AT5G26610 61.111 1.33e-06 47.8