Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3498 ATGGTGAACAGAAGAAAATTAGGAAGTGAAAATGAAGAAGGGAACATGGAATGGAAACAGATAAGGGAAGAGGCAGCATCAGTGGCTGCTGCACTACTAAGAGCTCGTAGAGCCAAAAAACGTTACATTGGTGTGCGCCAAAGGCCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACAATACAGAACATTAGACTCTGGTTGGGCACTTATGACACTGCTGAAGACGCCGCTAGAGCTTATGATGAGGCGGCGCGATTGCTTCGCGGTGCCAACACCCGCACGAATTTCTTCCTTCCTTCCCAATCTTGTGATTATGTTCCAGCTCTTCCTCCAAAGATTGCCAAACTCCTCCTTCTTAGGCTCAAAGTAAGAAACCTTGAATCTTCTTGCATGGTTGGTACCCCTTTTCCAACATATGAGCTAGAAACCAAACAAGAACCCGAACCCCATTTTTTTCACCAAATAGAAGAACAGCCCCACTTAGAAAACTTTCTAGAGAGCTATGATATTGGTGCTAGTTATGGTTCTTCTACTACCACAACTCCTTGTGATTATAGTAGTGGAGGTAATTATGATGAAAAAATAAACCAAGAGGGGAGGGGAGAGGATTTCAGATTGGGGATGGATTGTGCTAACAATATTGTTGATGATGGGATTGGGAACAAATACAATCACATTGTGAGTGGTGAGGGAGAATATGAAGACTGTGGTAGTGTTGGGCTCAATGACTTCCAGTTTTTGGATTCTGTTGGATCATCAAGCTACCCTTCTTCTGCATTTGACATAGCAGAGGAGATGGTGGGGCCAATGGATGAAGAGAAATGCAATATGGAGGAGGGTTTACCATTACTTAGAGAAACTTTTAGGATGAAGTATGAACGTAGATTCTCAGCTTGTCTTTACACATTAGTTGGAGTGTCTGAATGTTTGAATCTACGAGTTGGACCAGAAAATGGAGAGGAATTAGAAAAAAATTGA 981 0.4271 MVNRRKLGSENEEGNMEWKQIREEAASVAAALLRARRAKKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFLPSQSCDYVPALPPKIAKLLLLRLKVRNLESSCMVGTPFPTYELETKQEPEPHFFHQIEEQPHLENFLESYDIGASYGSSTTTTPCDYSSGGNYDEKINQEGRGEDFRLGMDCANNIVDDGIGNKYNHIVSGEGEYEDCGSVGLNDFQFLDSVGSSSYPSSAFDIAEEMVGPMDEEKCNMEEGLPLLRETFRMKYERRFSACLYTLVGVSECLNLRVGPENGEELEKN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3498 326 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Lja4g3498 326 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Lja4g3498 326 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 325 - -
Lja4g3498 326 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Lja4g3498 326 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Lja4g3498 326 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Lja4g3498 326 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Lja4g3498 326 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 9 325 - -
Lja4g3498 326 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Lja4g3498 326 CDD AP2 42 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3498 Lja-Chr4 65876330 65877310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3498 34 127 AP2-EREBP Transcription Factor Family AT5G19790 56.250 7.40e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja4g3498 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3498 K09286 - gmx:100793940 313.923