Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3497 ATGATTGTCTCTGCTCTCCTGACATCGGTTGGGATAAACACTGCACTCTGTGTTTTGTTCTTCGCATGCTACTCTATATTGAGGAAACAACCAACCAACTTCAGAGTTTACATACCTCGCTTGCTAGCAGCTCAAGGAACTTCACTCAAAACCCGATTCAATTTCAAAAGACTCATTCCTTCCCCTGATTGGGTTGCCAAATCTTGGAGCCTCTCTGAGGATCAACTTCTCTCATTATCAGGATTAGATGCTCTAGTTTTTATGCGCATCATCACCTTCAGTTTGAAATTATTTTCTTTTGCTGGGGTTGTTGGGATATTTGTGATTCTTCCTGTGCACTGCTGGGGAAATCAGCTGCAAGAATTTGACTTAGTTGACTTCGCCAGCAACTCGTTGGATGTGTTCACCATATCAAATGTGAACAGTGGTTCTGCTTGGTTGTGGATTCACTTCTTTGCTGTATATATTGTTACTGGATTTACATGCTTGCTACTTTTTTATGAATATAGATACATAGCTTCCAAGAGAATTTCTTATTTTTGTTCATCCAAACCTCAGCCACATCAGTTCACCATTTTAGTTCACAGTATTCGTGCTTCCTCGGGTTGCAGTATTAGTGATAGTGTTGAGAGCTTCTTTAAAGAGCTACACCCAAGTACATATTTGTCGCATGTGGTTATTCATCGCACAAATAAAATCCGAAGTCTCCTGAGTAAGGCAAAGGGTTTGTATAAAAGGATTATTCAATTACGTTCGGATCCTACTCAGCAAAAGTATAAGCATGGTGATTGTTTTGGTCTTTTTGGACAAAAAGATGATCTTATAGATCACTACGGAAAGAAGTTGGAGGACATTGAGCAGAATGTGAGATTGGAGCAATCAGAGGCTTCATTGGCAGGAGAAGAGTCTCGAGCTGCGTTCGTGTTCTTCAAGTCTCGTTATGCTGCTGCAACTTCTTTCCATTTGCAGCAATCAGTAAATCCTACCCATTGGATTACTGAGCCAGCTCCAGAACCTCGTGATATTTACTGGCCTTTCTTTTCTGAATCATTCATGCGAAAATGGATTTCAAAGTTGGTGGTTATAGTTGAGAGCACTCTTTTCACAATATTGTTCCTTATACCCGTTGTTATCGTTCAAGGCCTTACCAACCTCACTCAATTGAAAATTTTGTTTCCCTTTTTGACAAGCATTCTAACTATAAAATTTGTCACTCAAGTAATTACGGGATACCTACCAAGCCTTATTCTTCAGATGTCTCTGAAAGTGGTGCCTCCTATTATGCGGCTCCTGTCCACCATTCAAGGATACATCTCACATAGTAATATAGAAATGAGTGCGTGTAGAAAAGTACTGTGGTTCACAGTATGGAATGTGTTTTTTGCAACTGTATTTTCTGGGTCAGTTATAGATCATCTGTCTGTCGTTCTTGATCTGAAGGACCTTGCTGGGAAACTGGCTGTTGGAGTTCCAGCGCAGGCATCATTTTTCATTACTTACGTTGTCACAATTGGATGGACAAGTATATTATCTGAACTCTTTCAGATAATTCCTCTCATTTTAAGTTTAATAAAAAGACCCTTCACAAGACAAGAGGATGAATTTGAAGCTCCATCTATGGCTTACCACAGGGATGTTCCAAGGGTCCTTTTCTTTGGACTTCTTGGTATTACATATTTCTTCCTAGCCCCGCTAATTTTACCATTCCTCTTGGTCTATTTCTGTCTAGCGTACATCATTTTTCGAAACCAGTTCATAAATGTATATGCACCAAAGTATGAAACTGCAGGGAAATATTGGCCTATCGTGCACGATTCCATGATATTTTCTCTAGTACTCATGCACATCATAGCAGTGGGAATTTTCGCATTGAAAAAACTTTCTTCAGCATCCGGTTGGATGCTTCCTCTACCAGTCCTCACTCTTCTCTTTAACGAGTACTGCCGAAAACGATTCTTGCCCATATTTACTGCATACTCTGCAGAGAGTTTAATACACAAGGACAGAGAAGACCAAAATGATACTTCGATGGCCGATTTTTACGACAAATTGGTAATCGCTTATAACGACCCAGCTTTATTGCCAATTCAACACTCATCAAACACTGATGGTCTTCTTAGTCCCCTTTTATCTTCAGTATCACAGTCTCAATTATGA 2157 0.3982 MIVSALLTSVGINTALCVLFFACYSILRKQPTNFRVYIPRLLAAQGTSLKTRFNFKRLIPSPDWVAKSWSLSEDQLLSLSGLDALVFMRIITFSLKLFSFAGVVGIFVILPVHCWGNQLQEFDLVDFASNSLDVFTISNVNSGSAWLWIHFFAVYIVTGFTCLLLFYEYRYIASKRISYFCSSKPQPHQFTILVHSIRASSGCSISDSVESFFKELHPSTYLSHVVIHRTNKIRSLLSKAKGLYKRIIQLRSDPTQQKYKHGDCFGLFGQKDDLIDHYGKKLEDIEQNVRLEQSEASLAGEESRAAFVFFKSRYAAATSFHLQQSVNPTHWITEPAPEPRDIYWPFFSESFMRKWISKLVVIVESTLFTILFLIPVVIVQGLTNLTQLKILFPFLTSILTIKFVTQVITGYLPSLILQMSLKVVPPIMRLLSTIQGYISHSNIEMSACRKVLWFTVWNVFFATVFSGSVIDHLSVVLDLKDLAGKLAVGVPAQASFFITYVVTIGWTSILSELFQIIPLILSLIKRPFTRQEDEFEAPSMAYHRDVPRVLFFGLLGITYFFLAPLILPFLLVYFCLAYIIFRNQFINVYAPKYETAGKYWPIVHDSMIFSLVLMHIIAVGIFALKKLSSASGWMLPLPVLTLLFNEYCRKRFLPIFTAYSAESLIHKDREDQNDTSMADFYDKLVIAYNDPALLPIQHSSNTDGLLSPLLSSVSQSQL* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3497 718 Pfam Late exocytosis, associated with Golgi transport 6 168 IPR032880 -
Lja4g3497 718 Coils Coil 275 295 - -
Lja4g3497 718 Pfam Calcium-dependent channel, 7TM region, putative phosphate 358 622 IPR003864 GO:0016020
Lja4g3497 718 PANTHER BNAC06G30620D PROTEIN 2 712 - -
Lja4g3497 718 Pfam Cytosolic domain of 10TM putative phosphate transporter 189 345 IPR027815 -
Lja4g3497 718 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 2 712 IPR045122 GO:0005227
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3497 Lja-Chr4 65866373 65874061 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3497 K21989 - gmx:100789996 1080.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6054 1 111475200 111477817 Lja4g3497 4 65866373 65874061 PCT