Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3496 ATGAGTTCCGGCAGCGGCGGCGGCGGCAGCAGTAGCAACCGTGAGAATGAGAAGGCGAGGGTGAGCCGCACCTCTCTGATTCTCTGGCACGCCCACCAAAACGACGCCGCGGCGGTGCGGAAGCTTCTTCAAGAAGATCCCTCCCTTGTCAAAGCCAGAGACTACGACAACCGCACCTCGCTCCACGTCGCTTCCCTCCATGGCTGGATCGACGTCGCCAAATGCTTGATCGAGTTCGGCGCCGACGTCAACGCTCAAGATCGTTGGAAAAACACTCCTCTTGCTGATGCTGAAGGAGCTAAAAGGATTGATATGATCGAGCTTCTGAAATCACATGGAGGCTTGTCTTATGGCCAAACCGGGAGCCATTTTGAACCCAAGCCTGTTCCGCCTCCGTTGCCTAACAAGTGTGATTGGGAAATTGAACCTTCCGAGCTAGACTTTTCCAGTTCCGTGCGTATCGGGAAGGGATCTTTTGGTGAGATTTTGAAAGCCCATTGGCGTGGAACTCCAGTTGCTGTTAAACGCATTCTTCCCTCTCTTTCAGAAGATAGATTGGTGATTCAGGACTTTAGGCATGAGGTCAATTTGTTAGTGAAGCTTCGACACCCCAACATAGTTCAATTTCTTGGAGCTGTTACTGAAAGGAAGCCCCTTATGTTAATTACTGAGTATCTAAGAGGGGGTGATCTTCATCAGTACCTCAAAGAAAAAGGTTCACTTAGTCCCTCCACTGCTATCAACTTTTCCATGGATATTGTTAGAGGAATGGCCTATCTTCACAATGAACCAAATGTTATAATTCATAGAGACTTAAAGCCAAGGAATGTTCTTTTAGTTAATTCTAGTGCCGACCATTTAAAAGTTGGAGATTTCGGATTGAGTAAGCTTATCACCGTTCAGAATTCTCATGATGTATACAAGATGACTGGTGAAACTGGGAGCTATCGCTATATGGCTCCTGAAGTTTTCAAACATCGGAAATATGATAAGAAGGTTGACGTCTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCTCCTTTTGCAAGTTATGAACCTTACGATGGAGCAAAACATGCTGCTGAAGGACATAGGCCTAATTTTCGGGCAAAGGGTTATACCCCCGATTTGCAGGAATTAACACAAGAGTGTTGGGCTGCTGACATGAATAGAAGACCTTCTTTCATTGACATCCTTAAACGGCTTGAAAAGATCAAAGATAATTTACCTTCAGATCATCACTGGCACTTGTTCGCATCTTAA 1275 0.4565 MSSGSGGGGSSSNRENEKARVSRTSLILWHAHQNDAAAVRKLLQEDPSLVKARDYDNRTSLHVASLHGWIDVAKCLIEFGADVNAQDRWKNTPLADAEGAKRIDMIELLKSHGGLSYGQTGSHFEPKPVPPPLPNKCDWEIEPSELDFSSSVRIGKGSFGEILKAHWRGTPVAVKRILPSLSEDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTERKPLMLITEYLRGGDLHQYLKEKGSLSPSTAINFSMDIVRGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLITVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVYSFAMILYEMLEGEPPFASYEPYDGAKHAAEGHRPNFRAKGYTPDLQELTQECWAADMNRRPSFIDILKRLEKIKDNLPSDHHWHLFAS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3496 424 PIRSF ILK 2 424 - -
Lja4g3496 424 SUPERFAMILY Ankyrin repeat 24 113 IPR036770 -
Lja4g3496 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Lja4g3496 424 SMART ANK_2a 56 85 IPR002110 GO:0005515
Lja4g3496 424 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 416 - -
Lja4g3496 424 CDD STKc_MAP3K-like 154 406 - -
Lja4g3496 424 Pfam Ankyrin repeats (3 copies) 23 87 IPR002110 GO:0005515
Lja4g3496 424 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Lja4g3496 424 ProSiteProfiles Protein kinase domain profile. 148 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3496 424 SUPERFAMILY Protein kinase-like (PK-like) 140 419 IPR011009 -
Lja4g3496 424 SMART serkin_6 148 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3496 424 ProSitePatterns Protein kinases ATP-binding region signature. 154 175 IPR017441 GO:0005524
Lja4g3496 424 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 10 416 - -
Lja4g3496 424 Pfam Protein tyrosine and serine/threonine kinase 153 406 IPR001245 GO:0004672|GO:0006468
Lja4g3496 424 ProSiteProfiles Ankyrin repeat region circular profile. 56 88 - -
Lja4g3496 424 PRINTS Tyrosine kinase catalytic domain signature 261 279 IPR001245 GO:0004672|GO:0006468
Lja4g3496 424 PRINTS Tyrosine kinase catalytic domain signature 377 399 IPR001245 GO:0004672|GO:0006468
Lja4g3496 424 PRINTS Tyrosine kinase catalytic domain signature 223 236 IPR001245 GO:0004672|GO:0006468
Lja4g3496 424 Gene3D Transferase(Phosphotransferase) domain 1 228 419 - -
Lja4g3496 424 Gene3D - 7 123 IPR036770 -
Lja4g3496 424 Gene3D Phosphorylase Kinase; domain 1 133 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3496 Lja-Chr4 65857739 65865251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3496 2 424 MAP Kinase Kinase Kinase AT1G14000 83.924 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Lja4g3496 PK_Tyr_Ser-Thr 9.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3496 - - gmx:100793237 771.155