Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3493 ATGGCTAGTGCTTTATCTGTAGGTTCAGGCTGTGCTTTTCCCTTTCACAACAACACCTCCTTGTCCATGGCAGCCAAACCGTCACTCCTTCAGCTGAAGAAGCCTTTCGCTTCTATAGGAACCGAAACAACACCGGCGGTGTCTCCGGCAGTTCAAACCTTCTGGCAGTGGCTGAAGGAAGAAGGCGTTATCTCTGCCAAGACACCAGTGAAACCTGGTGCAGTCCCTGAAGGCCTTGGTCTAGTTGCCGTGAAAGACATTTCAAGAAACGACGTGGTTTTGCAGGTGCCCAAGAGGCTCTGGATAAACCCTGATGCTGTTGCAGCTTCAGAGATAGGGAACGTGTGTAGTGGGTTGAAGCCATGGTTGGCTGTTGCGCTTTTCCTGACGCGAGAGAGGACAAGAGATCAATCTCTATGGAAACACTACTTCAAGATTCTGCCACAGGAAACTGATTCAACTATATACTGGTCAGAGGAGGAGCTATCGGAGCTTCAAGGTACTCAACTTCTGAAAACAACACTGGCTGTGAAGGAATATGTGAAGAGTGAATTTCTGAGACTGGAAGAAGAAATCATTCTCCCTAATAAGAAGCTTTTCCCTTCTCCTATTACATTGGATGACTTCTACTGGGCATTTGGAATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTAATTCCACTAGCAGACTTGATAAACCACAGCGCCAGGGTAACTACAGAGGATCATGCTTATGAAGTTAAAGGAGCAGCAGGTCTTTTCTCTTGGGATTTCCTATTTTCCCTAAGGAGCCCCCTTTCTGTCAAGGCTGGGGAACAGGTATATATCCAATATGACTTGAAGAAAAGCAATGCCGAGTTGGCTTTAGACTACGGTTTCATTGAACCAACTACCGAGCGAAATGCATACAGCCTCACACTAGAGATATCTGAGGCAGATCCCTTTTATGGTGACAAATTAGACATTGCTGAGTCCAATGGTTTCAGTGTGTCAGAATCATTTGATATCTTCTACAACCGCCCACTTCCACCAGGGTTGCTTCTGTATCTGAGGCTATTAGCGCTAGGAGGTACTGATGCTTTCTTATTGGAATCAATATTCAGAAACTCCATCTGGGGTCATCTTGAATTGCCTGTGAGCCGTGACAATGAAGAGCTAGTATGCCGTGTTGTTCGAGAAGCCTGCAACTCTGCCCTTGGAGGTTATCATACAACTATTGAAGAGCAGGATCTGAAACTAAAAGAAACAAATATAGATTCAAGACTTGCAATCGCAGTTGGAATAAGAGAAGGGGAGAAGTTGCTCCTGCAGCAAATTGATGAGATCTTCAAGGAGAAAGAATTGGAGCTGGACCAATTAGAATATTATCAAGAAAGGAGGCTCAAGGATCTTGGACTTTGCGGAGAAAGTGGTGATGTTCTTGGGGATCTTGGAAAATACTTTTAA 1464 0.4481 MASALSVGSGCAFPFHNNTSLSMAAKPSLLQLKKPFASIGTETTPAVSPAVQTFWQWLKEEGVISAKTPVKPGAVPEGLGLVAVKDISRNDVVLQVPKRLWINPDAVAASEIGNVCSGLKPWLAVALFLTRERTRDQSLWKHYFKILPQETDSTIYWSEEELSELQGTQLLKTTLAVKEYVKSEFLRLEEEIILPNKKLFPSPITLDDFYWAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTEDHAYEVKGAAGLFSWDFLFSLRSPLSVKAGEQVYIQYDLKKSNAELALDYGFIEPTTERNAYSLTLEISEADPFYGDKLDIAESNGFSVSESFDIFYNRPLPPGLLLYLRLLALGGTDAFLLESIFRNSIWGHLELPVSRDNEELVCRVVREACNSALGGYHTTIEEQDLKLKETNIDSRLAIAVGIREGEKLLLQQIDEIFKEKELELDQLEYYQERRLKDLGLCGESGDVLGDLGKYF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3493 487 Pfam SET domain 78 284 IPR001214 GO:0005515
Lja4g3493 487 Gene3D set domain protein methyltransferase, domain 1 47 300 - -
Lja4g3493 487 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 309 480 IPR036464 -
Lja4g3493 487 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 5 485 IPR011192 GO:0009507|GO:0030785
Lja4g3493 487 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 35 478 - -
Lja4g3493 487 Gene3D - 301 466 IPR036464 -
Lja4g3493 487 Pfam Rubisco LSMT substrate-binding 317 439 IPR015353 -
Lja4g3493 487 SUPERFAMILY SET domain 48 304 IPR046341 -
Lja4g3493 487 PIRSF RMT_SET 1 486 IPR011192 GO:0009507|GO:0030785
Lja4g3493 487 ProSiteProfiles SET domain profile. 61 285 IPR001214 GO:0005515
Lja4g3493 487 SMART set_7 66 291 IPR001214 GO:0005515
Lja4g3493 487 CDD SET_RBCMT 70 300 IPR044431 GO:0016279|GO:0018022
Lja4g3493 487 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 35 478 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3493 46 240 NAC Transcription Factor Family AT3G56570 28.293 4.48e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja4g3493 SET 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3493 K00592 - gmx:100818113 774.237