Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3490 ATGGTGGTTGTTTCCTTCAAGGAATGCCTAAAGAACCATGCCGCCAGCTTAGGTGGCCATGCACTTGACGGTTGCGGTGAGTTCATGCCCTCTTCTTCCACCAACCCCACTGACCCTCGCTCCCTCAAATGTGCCGCATGTGGCTGCCACCGCAATTTCCACCGCCGTGACCCTTCAGCCCAAACCCCACCACAACCACTCCCTCACCATGGCATGAGCCGAAGCACAAGTCCAAGCCTGAGTTCCAGCCAAAGCCCAAGCCCAATCTCAAGCCCCTCCCCACCACCACTCTCACACATGCCACCTTCAGCTTCAGCAGTACCCCAAATGCTCCTAGCCCTTGGCACCGCATTTTCAACACCCCCTGAGAACCCAACTGCGAAGAAGAGGCAGAGAACGAAATTCACCATGGAGCAGAAGGAAAAGATGCAGAGCTTCTCTGAGAAATTGGGATGGAGAATGCAGAAAGATGATGGATTGGTCCAGAAATTCTGCAATGACATTGGAGTCTCCAGAGGGGTGTTCAAGGTTTGGATGCACAACAACAAGAATAGCTTTAGAAGGAGATCACAAGATCAGGGAGATGCTCCTCCTCCTCCTCCTCAAACTGAAAAGAATCATGGTGGTTGCTTTGATAGTGATATTAACAATAATGACATTCACATGAATCAAGATCACTCTACTGTCAATGTTCATTTCTCATCTTAA 708 0.4986 MVVVSFKECLKNHAASLGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPSAQTPPQPLPHHGMSRSTSPSLSSSQSPSPISSPSPPPLSHMPPSASAVPQMLLALGTAFSTPPENPTAKKRQRTKFTMEQKEKMQSFSEKLGWRMQKDDGLVQKFCNDIGVSRGVFKVWMHNNKNSFRRRSQDQGDAPPPPPQTEKNHGGCFDSDINNNDIHMNQDHSTVNVHFSS* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3490 235 MobiDBLite consensus disorder prediction 56 104 - -
Lja4g3490 235 MobiDBLite consensus disorder prediction 185 218 - -
Lja4g3490 235 Gene3D - 116 187 - -
Lja4g3490 235 MobiDBLite consensus disorder prediction 88 102 - -
Lja4g3490 235 MobiDBLite consensus disorder prediction 66 87 - -
Lja4g3490 235 MobiDBLite consensus disorder prediction 117 137 - -
Lja4g3490 235 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 6 57 IPR006456 -
Lja4g3490 235 Pfam ZF-HD protein dimerisation region 4 57 IPR006456 -
Lja4g3490 235 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 6 57 IPR006456 -
Lja4g3490 235 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 4 194 - -
Lja4g3490 235 SUPERFAMILY Homeodomain-like 117 188 IPR009057 -
Lja4g3490 235 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 128 184 IPR006455 -
Lja4g3490 235 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3490 Lja-Chr4 65787338 65788045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3490 4 186 ZF-HD Transcription Factor Family AT1G69600 50.000 1.86e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja4g3490 ZF-HD_dimer 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3490 - - lja:Lj5g3v0526310.1 438.343