Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3489 ATGGGCAGGTCACCATGCTGTGAAAAGGTGGGTTTGAAGAAAGGGCCATGGAATCCAGAGGAAGACCAAAAGCTCATGGCTTACATTGAAGAATTTGGCCATGGAAGCTGGCGTGCGTTGCCCGCCAAAGCAGGCCTCCAAAGATGTGGGAAGAGTTGCAGACTGAGGTGGACTAACTACCTTCGACCGGATATCAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACTATTATTCAACTTCATGCCCTTCTTGGAAACAGGTGGTCAGCAATAGCAGCTCAACTGCCAAAGAGAACCGACAACGAGATCAAAAACTACTGGAACACGCACCTCAAGAAGAGGTTAACCAGAATGGGCATAGACCCTACAACCCACAAGCCCAAAACCGATGCGCTTAGTGGCTCAGGGAGCGACGAGTTCAAAATATACTCATCCAACCTGAGCCACATGGCTCAATGGGAGAGCTCTCGCCTCGAAGCAGAGGCGAGGTTGGTGAGAGAATCCAAGTTGCAATTTCAACAACATGAGGCCCACAACAACAACAACCAACTTGGCTCTTCTTCTTCCACCTCCTCAAACCAGCCCGCACGCCTCGTTCTCAACAAAATTACCGCGCTTCAACCACTGTTGCCCCCGTGCCTCGACATTCTCAAGGCATGGCAGAGCTCGTTGTCAAACCAGCCAACCAAAGATTACAACAACAACAAGGTCATGCATAGCATGTGCGCCGTGATGCTTTCTACTGATGACACCCTGGAGTCTCCCACTTCCACTTTAAGCTTCCCCGGAACACTGCTTCCTCGTCCTCTTCCTCTTCCTGTTTCAACCTCCACCACTAATGTTGTTGGACACTTAAATGAGAACTCACTTCCTCTCACCACCACTACCACTAATGAGCCATGGGGGTGGGGGTGTAGTAGTTTAACAAACGCAGAAGGTGAAAAAAGAGTACTGGAGAATATTAACACGGCGTTTAACTTGCAAGATGATGACATTATGATGGCTGTGGAAGCATTTAGATCTGCGGGGTACGCAAACATCAGTGCTGTCCCTCCATTATCAAGCAATAATAATGATATAATTGTCCTTGAAGCTCTTAACAACGATGAAGCCATGGTTTATGATTCAAGCGATAATATGGAAGAAGGAGACATGGCGAACCCAGAAAATAGTAGGAGCTACTGGAATAGCATACTTGGCTTGGTGAATGACACGCTGTCTGGTTCGTCGATGTTCTGA 1242 0.4783 MGRSPCCEKVGLKKGPWNPEEDQKLMAYIEEFGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALSGSGSDEFKIYSSNLSHMAQWESSRLEAEARLVRESKLQFQQHEAHNNNNQLGSSSSTSSNQPARLVLNKITALQPLLPPCLDILKAWQSSLSNQPTKDYNNNKVMHSMCAVMLSTDDTLESPTSTLSFPGTLLPRPLPLPVSTSTTNVVGHLNENSLPLTTTTTNEPWGWGCSSLTNAEGEKRVLENINTAFNLQDDDIMMAVEAFRSAGYANISAVPPLSSNNNDIIVLEALNNDEAMVYDSSDNMEEGDMANPENSRSYWNSILGLVNDTLSGSSMF* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3489 413 CDD SANT 69 112 IPR001005 -
Lja4g3489 413 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 406 - -
Lja4g3489 413 CDD SANT 16 61 IPR001005 -
Lja4g3489 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja4g3489 413 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja4g3489 413 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja4g3489 413 Gene3D - 69 116 - -
Lja4g3489 413 Gene3D - 13 66 - -
Lja4g3489 413 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja4g3489 413 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 406 - -
Lja4g3489 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja4g3489 413 SMART sant 66 114 IPR001005 -
Lja4g3489 413 SMART sant 13 63 IPR001005 -
Lja4g3489 413 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja4g3489 413 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3489 Lja-Chr4 65767417 65769162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3489 1 275 MYB Transcription Factor Family AT3G01140 60.727 1.98e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g3489 Myb_DNA-binding 5.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3489 K09422 - gmx:100809025 494.967