Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3487 ATGACAGAAGAAGAGGAGTATCTGCAACTGCAACACCTCAGATCCAAAGCAACAGAGCTTTTCATCAGAGAAGAATGGAAGGATTCAATCGATGCATATACCCACTTCATCAACCTCTGCACCCACCAAATCCAAATCTCCCATTCTCACCCTGAAAAGCTTCGCAAATCCCTCTGCATTGCCCTCTGCAACCGCGCCGAAGCGAGCTCCAGGTTGCGCGATTTCCACTGCGCATTGCAAGATTGTGACCATGCTCTCAATCTCGATCCCACTCACTTCAAGACCTTGGTCTGCAAAGGTAAGATCTTGCTCGGTCTCAACAGGTACTCAATGGCTCTGGAATGCTTCAGAATCGCTCTGCTTGACCCTCAGGCTGCTGGGAACTCTGAGACCCTAAATGGGTATTTTCAGAAATGTAAAAAGTTTGAATTTTTGTCAAGAACAGGGTCTATTGATCTCTCAGATTGGGTTGCAAATGGGTTCCCGGGAAAGGCGCCGGAGCTCGCGGAACACATTGGTGCTGTGGAGATCAAGAAATCGGAGATCAGCGGGCGCGGTCTGTTCGCGACGAAGAATATTGATGCCGGGTCGTTGATCTTGGTCACCAAGGCTATAGCAATTGAGAGAAGTTTGTTGAATGAAGGTAAAGATTTGAGTGAGGATGCACAATTGGTAATTTGGAAGAATTTTGTTGATAAGGTTTCGGAGTTTATCAGGAAATGTCACAAGACTAGGAGTTTGATTGGTAGGTTGTCAATTGGGGAGAATGAGGATGGGCTTGAAGTGCCTGATGTGGATCTCTTTAGGCCTCAGAATGTGGAGGATGTGGAATCAATTGAGGAGATTGATATGGTTAAGCTACTTGCTATATTGGATGTGAATTCTCTCACTGAGGATGCTGTTTCGGCTAATATTTTGAGAAAGCAGAATGATTGTTATGGTGTTGGGTTGTGGTTGCTGCCTGCTTTCATCAATCATTCATGTTGTCCTAATGCAAGGAGGTTGCATGTGGGGGATTATCTGATTGTTCATGCTTCCAAAGATTTGAAAGCTGGTGAAGAGATCACTTTTGCTTATCTTGATCCTTTGTCTCCCTTGAACAAGAGGAAAGAGATGTCAGTGACCTGGGGAATACATTGCAAGTGTAGGAGATGCAAATTTGAAGGGGAAATCTTCTCCAAACAAGAGATGAAAGAGATTGAGATTGGTGTTGAAAGAGGGTTGTTGGATGTGGGTGGTGTTGTGTATAAACTAGAGGATCAGATGAAGAGGTGGAAGGTGAGGGGAAAAGAGAAAGGGTTTTTGAGGGCATCTTTTTGGTCTGCATATTCAGAGGCTTATAGGTCTGAGAGGTCCATGAAGAGATGGGGGAGGAGGATTCCGGCGCTCGATGCGGTGGTTGATAGTGTCACTGATGTAGTTGGGGGTGATCACAGGTTGCTCAGGATACTGGTGGAGGAGATGAAGAAAAATGGTGGTGGCCATGTGGAGATGGAAAAAGTCTTCAAGTTGGCCAAAGATGTGTATGGAAAGGTAGTGAAAAAACAAGCAATGAGGAAAATTCTTGAACTCTGCATTGCTGATTGA 1587 0.4512 MTEEEEYLQLQHLRSKATELFIREEWKDSIDAYTHFINLCTHQIQISHSHPEKLRKSLCIALCNRAEASSRLRDFHCALQDCDHALNLDPTHFKTLVCKGKILLGLNRYSMALECFRIALLDPQAAGNSETLNGYFQKCKKFEFLSRTGSIDLSDWVANGFPGKAPELAEHIGAVEIKKSEISGRGLFATKNIDAGSLILVTKAIAIERSLLNEGKDLSEDAQLVIWKNFVDKVSEFIRKCHKTRSLIGRLSIGENEDGLEVPDVDLFRPQNVEDVESIEEIDMVKLLAILDVNSLTEDAVSANILRKQNDCYGVGLWLLPAFINHSCCPNARRLHVGDYLIVHASKDLKAGEEITFAYLDPLSPLNKRKEMSVTWGIHCKCRRCKFEGEIFSKQEMKEIEIGVERGLLDVGGVVYKLEDQMKRWKVRGKEKGFLRASFWSAYSEAYRSERSMKRWGRRIPALDAVVDSVTDVVGGDHRLLRILVEEMKKNGGGHVEMEKVFKLAKDVYGKVVKKQAMRKILELCIAD* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3487 528 SUPERFAMILY SET domain 174 386 IPR046341 -
Lja4g3487 528 Gene3D SET domain 173 251 IPR046341 -
Lja4g3487 528 Pfam SET domain 184 359 IPR001214 GO:0005515
Lja4g3487 528 SMART tpr_5 93 125 IPR019734 GO:0005515
Lja4g3487 528 SMART tpr_5 59 92 IPR019734 GO:0005515
Lja4g3487 528 Gene3D Tetratricopeptide repeat domain 3 143 IPR011990 GO:0005515
Lja4g3487 528 CDD SET_SMYD 288 385 - -
Lja4g3487 528 Gene3D SET domain 266 389 IPR046341 -
Lja4g3487 528 ProSiteProfiles SET domain profile. 173 360 IPR001214 GO:0005515
Lja4g3487 528 SMART set_7 173 366 IPR001214 GO:0005515
Lja4g3487 528 SUPERFAMILY TPR-like 12 120 IPR011990 GO:0005515
Lja4g3487 528 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 9 505 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja4g3487 SET 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3487 - - mtr:MTR_4g082140 844.343