Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3482 ATGGGTCTTGATCAGGATGCTAAAAACCCAAGCCTTCAGCTTATTCTAGGACTAGCTTTGACTCTCACACCGGAAGATCAAACCACCAACCGGTCACCATCTAACAAGGTTGTTGCTGATCATGAGCCGAACCCAACGCAGCCAAGGAAACTCTACCCCGAGGCTGAGCCATCGTTAACGTTGGGTCTTTCCGGTGAGAGTTACCCGCAGAAGGTGGTCAAAGTCAACAAAAATAAGGTTTTCTACGGTGAGGACGGTCTTGACTTGTCTACGACGCAAACTTCACCTCACTGCAGCACTGTTTCCTCCTTCTCCAGTGGCAAGGTCAAGAGGGAAAGAGATCATGGCAGTGAAGAAGTGGACACGGCGGAGATAGATGAAGACGGCGCCACTGCCGCCAGAAAGAAGCTCAGGCTAACAAAGGAACAATCTGCTATGCTTGAAGAAAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCAAGACAGTTAAATCTCCGGCCCCGACAAGTTGAGGTGTGGTTCCAGAATCGTAGAGCCAGAACAAAGCTGAAGCAAACCGAGGTGGATTGCGACTTTCTGAAGAAATGTTGTGAAACGTTGACGGACGAGAACATGCGGTTGCAGAAGGAGCTGCAAGAGCTGAAGGCGCTGAAGACGCAGCCGTTATACATGCCTATGCCGGCGGCCACGCTCACCATGTGCCCTTCTTGTGAGAGGCTTGGTGGTGTTAGTGGTGGCGGCGCTTCCAATAAGATTCCGTTCTCCATGGCTTCCAAGCCTCACTTCTTCAACCCCTTCACCAATCCTTCTGCAGCATGTTGA 840 0.5048 MGLDQDAKNPSLQLILGLALTLTPEDQTTNRSPSNKVVADHEPNPTQPRKLYPEAEPSLTLGLSGESYPQKVVKVNKNKVFYGEDGLDLSTTQTSPHCSTVSSFSSGKVKRERDHGSEEVDTAEIDEDGATAARKKLRLTKEQSAMLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCDFLKKCCETLTDENMRLQKELQELKALKTQPLYMPMPAATLTMCPSCERLGGVSGGGASNKIPFSMASKPHFFNPFTNPSAAC* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3482 279 MobiDBLite consensus disorder prediction 22 64 - -
Lja4g3482 279 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Lja4g3482 279 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Lja4g3482 279 CDD homeodomain 134 191 IPR001356 GO:0003677
Lja4g3482 279 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Lja4g3482 279 Coils Coil 196 226 - -
Lja4g3482 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 13 279 - -
Lja4g3482 279 SMART halz 190 232 IPR003106 GO:0006355|GO:0043565
Lja4g3482 279 Gene3D - 138 188 - -
Lja4g3482 279 SUPERFAMILY Homeodomain-like 128 191 IPR009057 -
Lja4g3482 279 SMART HOX_1 132 194 IPR001356 GO:0003677
Lja4g3482 279 MobiDBLite consensus disorder prediction 91 106 - -
Lja4g3482 279 MobiDBLite consensus disorder prediction 22 41 - -
Lja4g3482 279 MobiDBLite consensus disorder prediction 91 123 - -
Lja4g3482 279 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Lja4g3482 279 PANTHER - 13 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3482 Lja-Chr4 65647712 65649440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3482 1 279 Homeobox Transcription Factor Family AT4G37790 57.096 8.90e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja4g3482 Homeodomain 9.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3482 K09338 - gmx:100795135 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0222 2 2017259 2018769 Lja4g3482 4 65647712 65649440 PCT