Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3479 ATGGGGAGGGCTCCTTGCTGTGACAAGTCCAGCGTCAAGAAAGGTCCATGGTCGCCTGAAGAAGATGCCAAACTCAAAACATATATCGACCACCACGGCACCGGTTGCAATTGGATAGCCCTGCCTCAAAGAATAGGCTTGAAAAGGTGTGGGAAAAGCTGTCGTCTTAGATGGCTGAATTATCTTCGCCCAAACCTTAAACATGGGGGTTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTAATATCGGAAGCAGGTGGTCTATTATGGCAGCGCAATTACCCGGTCGCACGGATAATGATATAAAGAACTATTGGAACACCAAGTTGAAGAAGAAGCTCCTAGGCAATCAGAGGAAGGAGCAATTACAGGCTCAAGCTCACCAAGTTTGCAGCATGAATCAAGAGATCAAGAGAGAAAGTGAAAATTGGGAAGTTATAAGCCAAAATCCCTATTGGCCTAGAGAGCAGTCCTTGGCAAATTATAATAATGTTTCGAATATTCAAGACTATGATCTCAACAACAATCAAGTATCATCCTTGAAAAGCTTGTTAACCAAACTAGGAGGAGTTAAATTTTCCTATGATCTTCAACAACCATACACTAACATGATGAGTTCACAGTCCTCATCATGTGACATTCCATCCACAATGAACATGATAAACAGTGGTCCCATTACCACATATTTCCCTGCAAACACATTTCAAGAATTTGGGAATTTATCCAATGATTTGAGTAATGACTTGGTGGGATGTGTAAACTCGCCAGAAATAGATGGATCAATGATGCAGTTTTTATGTGGAATTTAG 819 0.4115 MGRAPCCDKSSVKKGPWSPEEDAKLKTYIDHHGTGCNWIALPQRIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVNIGSRWSIMAAQLPGRTDNDIKNYWNTKLKKKLLGNQRKEQLQAQAHQVCSMNQEIKRESENWEVISQNPYWPREQSLANYNNVSNIQDYDLNNNQVSSLKSLLTKLGGVKFSYDLQQPYTNMMSSQSSSCDIPSTMNMINSGPITTYFPANTFQEFGNLSNDLSNDLVGCVNSPEIDGSMMQFLCGI* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3479 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Lja4g3479 272 CDD SANT 71 113 IPR001005 -
Lja4g3479 272 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 206 - -
Lja4g3479 272 Gene3D - 70 145 - -
Lja4g3479 272 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lja4g3479 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Lja4g3479 272 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lja4g3479 272 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lja4g3479 272 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lja4g3479 272 PANTHER OS09G0431300 PROTEIN 1 206 - -
Lja4g3479 272 CDD SANT 16 62 IPR001005 -
Lja4g3479 272 Coils Coil 123 143 - -
Lja4g3479 272 SMART sant 13 64 IPR001005 -
Lja4g3479 272 SMART sant 67 115 IPR001005 -
Lja4g3479 272 Gene3D - 7 68 - -
Lja4g3479 272 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3479 Lja-Chr4 65582416 65583981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3479 1 136 MYB Transcription Factor Family AT5G65790 81.618 4.08e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g3479 Myb_DNA-binding 4.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3479 K09422 - gmx:106795158 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0225 2 2041166 2043053 Lja4g3479 4 65582416 65583981 PCT