Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3478 ATGAAGAGGAGTGGTATTGAAAAGGCCATTGAAGGAGGAATGGAAGTGAGTCATGAAGAACGTTCAATTCAGATGAACAGTGATGGTGAACAAGATGGGAACGCCCACGTTGAGGACATGAATGTTCCGTTGCCTCATGGTGTTCATGGTGTACTGAAGATTGATACCCTACAAGATATACTTGGCATAGATCTCAAAAAATTGGTTCCACTTGACTTGATGAATTATGAGTTTCTGGATAGTGAGGTGGCGTATCTTTTCTACCATTGGTATGGACGAGTAAATGGGTTTGCGGTGAGGAAAAGCAGAAAGATTCACAACAAGGAAGGGTTACTTATACAACGCAATTTTGTTTGTCATAGAGAAGGCTTGCGTGAAGATAGAGGTTTGACTTTGGAAAAACGTCAACGTGAATCAAGGGCAGATTTCAGGTGCGGGTGCACGGCCAAATTTAGGGTACATGTGGATACTTCAAATGGTCGGTGGTATGCAAAGCTATTTACTGATGAGCACAATCATGTCTTGGAAGAGGATAAAATGTGTGGCATGATAGCAGCTCACAGGAAAATGAATGATTCAGATATTCTGCATATGAACAACATGTCACGAGCTGGTGTAAGTACTCCTCATATCCACAGCACATTTGCCTACCAAACTGGTGGATTTCAAAAGGTCAGATTTTCGAAAGGCTTCAAACGGACTTAA 705 0.4184 MKRSGIEKAIEGGMEVSHEERSIQMNSDGEQDGNAHVEDMNVPLPHGVHGVLKIDTLQDILGIDLKKLVPLDLMNYEFLDSEVAYLFYHWYGRVNGFAVRKSRKIHNKEGLLIQRNFVCHREGLREDRGLTLEKRQRESRADFRCGCTAKFRVHVDTSNGRWYAKLFTDEHNHVLEEDKMCGMIAAHRKMNDSDILHMNNMSRAGVSTPHIHSTFAYQTGGFQKVRFSKGFKRT* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3478 234 Pfam FAR1 DNA-binding domain 87 175 IPR004330 -
Lja4g3478 234 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 44 199 - -
Lja4g3478 234 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 44 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3478 Lja-Chr4 65578105 65581650 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja4g3478 FAR1 7.3e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3478 - - mtr:MTR_1g070355 203.371