Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3475 ATGAAGACCATGGATAATGATGATAGTGTTGATGATGTTAACAATCAAAATAACTGGTTGGGATTCTCACTCTCTCCTCAAATGAACATGGGAGTTTCTTCACAAACTCATCATCACTCTCAACCTTCTTCTGTTTCTGCTGAAGTGGTTCCACCAAGCTTTTACCACCATGCTCCTCCTCTTAGCAACTATGGCTTCTATTATGGACTTGAAGGTGAAAATGTTGGGTTGTATTCAGCTTTTCCAGTCATGCCCCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTCTTCAAAGCAGATCACAACAAGAAGCACAAGCAATGGCTACTACTTCAGCACCAAAATTGGAGAATTTCTTGGGCAGTGAAGGGATGGGGACCCCTCACTATAGTGTATCAGAAACAATGCCTCTAAGCTTAGATAGCATTTTTTACAACCAAACCTCACGCCACCAAAATAACCCAAGTTACCAAAACCAAGTTCAACACATCAATAGCCATCAACAACAGCAAGAGCTTCATGCTCAACAGTTATCATATTACTCCACCTTGAGAAACCATGAAGAGATGTTAGAAGTGTCCAAGCAAAGTACTCAAACTTGTGACATCAACCTCCATGTTCCAAACTTCCCAGCTAGCATTGCACAAGAGTCAAAGATGGTTGTTGCTGTGCAGGAAAATGAAGGTGAATCAATGGGATATGGGGATTTGAAGTCCTTAACATTGTCCATGAGTCCTAGCTCACAGTCAAGCTGTGTCACGAGTTCACAGCGTGCATCACCTGCTGTCACTGATTCTGTTGCCATGGAAACAAAGAAAAGAGGAGCTGAAAAGGTTGACCAGAAGCAAATTGTTCATAGGAAATCCATTGACACCTTTGGACAGAGAACATCACAGTATAGAGGTGTAACAAGGCATAGATGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGTCTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGACCTGGCTGCACTCAAGTATTGGGGTCCCTCCACACACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAGGGAATGAAGAATATGACTAGACAGGAATATGTTGCACATTTAAGAAGAAAAAGCAGTGGTTTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCTCGGATTGGTAGGGTGGCTGGAAACAAAGATCTTTATCTTGGGACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATAAAATTCAGAGGAGCTAATGCTGTGACCAACTTTGATATCACAAAATATGATGTGGAAAAAATCATGGCAAGTAGCAACCTTCTTAGCAGTGAACTAGCAAGGAGGAACAGAGAGGTAGAAGGTGGTGGAACTCAGTACATTGATCAGAAGCCTCCATCATATGATAACAATCAAGAAGCAATTTTGATGCAGAAGAGTGCTGAATCTGAAGGCCAATCAAATCAGTGGAAGATGGTTCTGTGTCAAAATCAGAATCAACCACCAAGAACTCATGAGAGCTTCTCAGCTGTGTCTTTAGACCACATGTTTCTACATCAAGAAGTAGAGGAATCTAGTAAAGTGAGAAGCCATGTGTCAAATCCTTCTTCATTGGCCACAAGTCTGAGTAGCTCAAGAGAAGGTAGCCCAGATAGGACAAGCATGGCACCTGTGCTTTCTGGAATAGCTTCAACAGCTGCTGCTTCAAAACTATTGGCTGCTAATCCAAATAGTAACGTCAATTCTTGGGATCCATCACATCATCTTAGGCCTGCACTTTCTTTGCCTCAGATTCCAGTTTTTGCTGCTTGGACAGATGCATAG 1926 0.4252 MKTMDNDDSVDDVNNQNNWLGFSLSPQMNMGVSSQTHHHSQPSSVSAEVVPPSFYHHAPPLSNYGFYYGLEGENVGLYSAFPVMPLKSDGSLYGMEALQSRSQQEAQAMATTSAPKLENFLGSEGMGTPHYSVSETMPLSLDSIFYNQTSRHQNNPSYQNQVQHINSHQQQQELHAQQLSYYSTLRNHEEMLEVSKQSTQTCDINLHVPNFPASIAQESKMVVAVQENEGESMGYGDLKSLTLSMSPSSQSSCVTSSQRASPAVTDSVAMETKKRGAEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEGMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDITKYDVEKIMASSNLLSSELARRNREVEGGGTQYIDQKPPSYDNNQEAILMQKSAESEGQSNQWKMVLCQNQNQPPRTHESFSAVSLDHMFLHQEVEESSKVRSHVSNPSSLATSLSSSREGSPDRTSMAPVLSGIASTAAASKLLAANPNSNVNSWDPSHHLRPALSLPQIPVFAAWTDA* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3475 641 MobiDBLite consensus disorder prediction 559 590 - -
Lja4g3475 641 ProSiteProfiles AP2/ERF domain profile. 402 460 IPR001471 GO:0003700|GO:0006355
Lja4g3475 641 CDD AP2 401 462 IPR001471 GO:0003700|GO:0006355
Lja4g3475 641 PRINTS Ethylene responsive element binding protein signature 301 312 IPR001471 GO:0003700|GO:0006355
Lja4g3475 641 PRINTS Ethylene responsive element binding protein signature 442 462 IPR001471 GO:0003700|GO:0006355
Lja4g3475 641 SUPERFAMILY DNA-binding domain 401 461 IPR016177 GO:0003677
Lja4g3475 641 Pfam AP2 domain 403 452 IPR001471 GO:0003700|GO:0006355
Lja4g3475 641 Pfam AP2 domain 300 358 IPR001471 GO:0003700|GO:0006355
Lja4g3475 641 CDD AP2 299 366 IPR001471 GO:0003700|GO:0006355
Lja4g3475 641 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 639 - -
Lja4g3475 641 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 15 639 - -
Lja4g3475 641 SMART rav1_2 300 372 IPR001471 GO:0003700|GO:0006355
Lja4g3475 641 SMART rav1_2 402 466 IPR001471 GO:0003700|GO:0006355
Lja4g3475 641 MobiDBLite consensus disorder prediction 563 585 - -
Lja4g3475 641 SUPERFAMILY DNA-binding domain 299 368 IPR016177 GO:0003677
Lja4g3475 641 Gene3D AP2/ERF domain 402 462 IPR036955 GO:0003700|GO:0006355
Lja4g3475 641 Gene3D AP2/ERF domain 299 368 IPR036955 GO:0003700|GO:0006355
Lja4g3475 641 ProSiteProfiles AP2/ERF domain profile. 300 366 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3475 Lja-Chr4 65501526 65505368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3475 1 484 AP2-EREBP Transcription Factor Family AT4G37750 55.019 1.16e-164 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lja4g3475 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3475 K09285 - gmx:100787611 859.366