Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja4g3470 | ATGGCCAGGAGAAAAGTTAAACGTGAATACATTGTCAATGACTCTGCGAGGAAGACAACATACAGGAAAAGGAAGAAAGGTTTGATCAAGAAGGTGGATGAACTAAGCACCCTTTGTGGAATTGAAGCATGTGCTATAATTTATAGCCCCTTCGAACCTCAACCTGTGGTTTGGCCATCCCCACCTGGGGTTCACAAAGCGTTGGAAAGCAAGAAGATGGTGAACCAGGAGACTTTCACAAAACAGATGATCCTGAAGGCAAAAGACCAAATGATGAAACAGAGGAAGGAAAACAGGGAGAAAGAGATGAACTTGCACATGTATAGGTGCATCAATGCAGGGAAGGTTCAACCCAACATGAACATGAATGATCTGAATGATCTTGCATGGGTGATTGATCAAAATTTGAAGGAGGTCGACCGAGCGTTGGAAAAAATGAATAAGACTGTGGTCCACCAGGGTCAATCTTCAGTCCTAGTCGGTGAAAGTTCAATCCAACCCCAAATGGCACTAGCACCAGCACTTGCAGTAGCCAAAACTGAAGAAATGGCCATAGTGAATGATGTCCATGGGCTGGTCACGGCTAATTCTGATGCCATGCAGAGGCAATGGTATATGAATTTGATCAATGATAATTATGGGAATGAGACAGTCCCATTATTTGGAGATGCTAATCTCCAAAATGGATTATTTTGGCCCCACCCATAA | 708 | 0.4336 | MARRKVKREYIVNDSARKTTYRKRKKGLIKKVDELSTLCGIEACAIIYSPFEPQPVVWPSPPGVHKALESKKMVNQETFTKQMILKAKDQMMKQRKENREKEMNLHMYRCINAGKVQPNMNMNDLNDLAWVIDQNLKEVDRALEKMNKTVVHQGQSSVLVGESSIQPQMALAPALAVAKTEEMAIVNDVHGLVTANSDAMQRQWYMNLINDNYGNETVPLFGDANLQNGLFWPHP* | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja4g3470 | 235 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677|GO:0046983 | |
| Lja4g3470 | 235 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
| Lja4g3470 | 235 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
| Lja4g3470 | 235 | PANTHER | MADS BOX PROTEIN | 2 | 157 | - | - | |
| Lja4g3470 | 235 | Gene3D | - | 13 | 109 | IPR036879 | GO:0003677|GO:0046983 | |
| Lja4g3470 | 235 | CDD | MADS_SRF_like | 2 | 75 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
| Lja4g3470 | 235 | SUPERFAMILY | SRF-like | 1 | 76 | IPR036879 | GO:0003677|GO:0046983 | |
| Lja4g3470 | 235 | Coils | Coil | 84 | 104 | - | - | |
| Lja4g3470 | 235 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
| Lja4g3470 | 235 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN | 2 | 157 | - | - | |
| Lja4g3470 | 235 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 50 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja4g3470 | Lja-Chr4 | 65393031 | 65393768 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja4g3470 | 1 | 164 | Type I MADS-box Gene Family | AT5G48670 | 47.701 | 7.17e-42 | 143 |
Transcription factors information