Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3466 ATGGCCAGGAGAAAAGTGAAACGTGAATACATTGTCAATGACTCTGCGAGGAAGACAACATACAGGAAAAGGAAGAAAGGTTTGATCAAGAAGGTGGATGAACTAAGCACCCTTTGTGGAATTGAAGCATGTGCTATAATTTATAGCCCCTTCGAACCTCAACCTGTGGTTTGGCCATCCCCACCTGGGGTTCAGAAAGCGTTGGAAAGCAAGAAGATGGTGAACCAGGAGACTTTCACAAAACAGATGATCCTGAAGGCAAAAGACCAAATGATGAAACAGAGGAAGGAAAACAGGGAGAAAGAGATGAACTTGCACATGTATAGGTGCATCAATGCAGGGAAGGTTCAACCCAACATGAACATGAATGATCTGAATGATCTTGCATGGGTGATTGATCAAAATTTGAAGGAGGTCGACCGAGCGTTGGAAAAAATGAATAAGACTGTGGTCCACCAGGGTCAATCTTCAGTCCTAGTCGGTGAAAGTTCAATCCAACCCCAAATGGCACTAGCACCAGCACTTGCAGTAGCCAAAACTGAAGAAATGGCCATAGTGAATGATGTCCATGGGCTGGTCACGGCTAATTCTGATGCCATGCAGAGGCAATGGTATATGAATTTGATCAATGATAATTATGGGAATGAGACAGTCCCATTATTTGGAGATGCTAATCTCCAAAATGGATTATTTTGGCCCCACCCATAA 708 0.435 MARRKVKREYIVNDSARKTTYRKRKKGLIKKVDELSTLCGIEACAIIYSPFEPQPVVWPSPPGVQKALESKKMVNQETFTKQMILKAKDQMMKQRKENREKEMNLHMYRCINAGKVQPNMNMNDLNDLAWVIDQNLKEVDRALEKMNKTVVHQGQSSVLVGESSIQPQMALAPALAVAKTEEMAIVNDVHGLVTANSDAMQRQWYMNLINDNYGNETVPLFGDANLQNGLFWPHP* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3466 235 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lja4g3466 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g3466 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g3466 235 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Lja4g3466 235 CDD MADS_SRF_like 2 61 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lja4g3466 235 PANTHER MADS BOX PROTEIN 2 157 - -
Lja4g3466 235 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 157 - -
Lja4g3466 235 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Lja4g3466 235 Coils Coil 84 104 - -
Lja4g3466 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja4g3466 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3466 Lja-Chr4 65382731 65383468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3466 1 164 Type I MADS-box Gene Family AT5G48670 48.276 1.05e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja4g3466 SRF-TF 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3466 - - lja:Lj4g3v0730740.1 337.035