Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3460 ATGGCCAGGAGAAAAGTGAAACGTGAATACATTGTCAATGACTCTGCGAGGAAGACAACATACAGGAAAAGGAAGAAAGGTTTGATCAAGAAGGTGGATGAACTAAGCACCCTTTGTGGAATTGAAGCATGTGCTATAATTTATAGCCCCTTCGAACCTCAACCTGTGGTTTGGCCATCCCCGTCGGGGGTTCAAAGGGCGTTGGAAAGGTTAAAGACAATGCCTGAATTGGAGCAGAGCAAGAAGATGGTGAACCAGGAGACTTTCACGACACAAATGATCTTGAAGGCAAAAGACCAAATGATGAAACAGAGGAAGGAAAACAGGGAGAAAGAGATGAACTTGCACATGCATAGGTGCATCAATGCAGGGAAGGTTCTTCCCAACATGAACATGAATGATCTGAATGATCTTGCATGGGTGATTGATCAAAATTTGAAGGAGGTCGACCGAGCGTTGGAAAAAGTGAATAAGACTGTGATCCACCAGGGTCAATCTTCAGTCTTAGTCGGTGAAAGTTCAATCCAACCCCAAATGGCGCTAGCACCAGCACTTGCAGTAGCCAGGAATGTAGAAATGGCCATGGTGAATGATGCCCATGGGCTGGTCACGGATAATTTTGACGCCATGCAGAGGCAATGGTATATGAATTTGATCAATGATAATTATGGGAATGAGACAGTGCCATTATTTGGAGATGCTAATCTCCAAAATGGATTATTTTGGCCCCACCCATAA 738 0.4417 MARRKVKREYIVNDSARKTTYRKRKKGLIKKVDELSTLCGIEACAIIYSPFEPQPVVWPSPSGVQRALERLKTMPELEQSKKMVNQETFTTQMILKAKDQMMKQRKENREKEMNLHMHRCINAGKVLPNMNMNDLNDLAWVIDQNLKEVDRALEKVNKTVIHQGQSSVLVGESSIQPQMALAPALAVARNVEMAMVNDAHGLVTDNFDAMQRQWYMNLINDNYGNETVPLFGDANLQNGLFWPHP* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3460 245 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lja4g3460 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 201 - -
Lja4g3460 245 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Lja4g3460 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lja4g3460 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 - -
Lja4g3460 245 Coils Coil 94 114 - -
Lja4g3460 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g3460 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g3460 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja4g3460 245 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lja4g3460 245 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3460 Lja-Chr4 65281894 65299050 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3460 1 174 Type I MADS-box Gene Family AT5G48670 51.149 9.70e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja4g3460 SRF-TF 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3460 - - lja:Lj0g3v0271989.1 327.405