Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3457 ATGACCAGGAGAAAGGTGAAACTTGCATACATAGTCAATGACTCTGCAAGGAAGACAACTTACAAGAAAAGGAAGAAAGGTTTGCTCAAGAAGGTGGATGAACTAAGCACCCTTTGTGGAATTGAAGCATGTGCTATAATTTATAGCTCCTTCGAACCTCAACCTGTGGTTTGGCCATCCCCACCTGGGGTTCAAAAGGCGTTGGAAAGCAAGAAGATGGTGAACCAGGAGACTTTCACAAGACAGATGATCCTGAAGGCAAAAGACCAAGTGATGAAACAGAGGAAGGAAAACAGGGAGAAAGAGATGAACTTGCACATGTATAGGTGCATCAATGCAGGGAAGGTTCAACTCAACATGAACATGAATGATCGGAATGATCTTGCATGGGTGATTGATCAAAATTTGAAGGAGGTCGACCGAGCTTTGGAAAAAATGAATAAGACTGTGATCCACCAGGGTCAATCTTCAGTCTTAGTCGGTGAAAGTTCAATCCAACCTCAAATGGCACAAGCACCAGCACTTGCAGTTGCCAAAACTGAAGAAATGACCATGGTGAATGATGTCCATGGGCTGGTCACGGATAATTCTGACGCCATGCAGAGGCAATGGTATATGAATTTGATCAATGATAATTATGGGAATGAGATAGTGCCACTATTTGGAGATGCTAATCTCCAAAATGGATTATTTTGGCCCCACCCATAA 708 0.4294 MTRRKVKLAYIVNDSARKTTYKKRKKGLLKKVDELSTLCGIEACAIIYSSFEPQPVVWPSPPGVQKALESKKMVNQETFTRQMILKAKDQVMKQRKENREKEMNLHMYRCINAGKVQLNMNMNDRNDLAWVIDQNLKEVDRALEKMNKTVIHQGQSSVLVGESSIQPQMAQAPALAVAKTEEMTMVNDVHGLVTDNSDAMQRQWYMNLINDNYGNEIVPLFGDANLQNGLFWPHP* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3457 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja4g3457 235 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Lja4g3457 235 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 156 - -
Lja4g3457 235 PANTHER MADS BOX PROTEIN 2 156 - -
Lja4g3457 235 Coils Coil 84 104 - -
Lja4g3457 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g3457 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g3457 235 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Lja4g3457 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lja4g3457 235 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3457 Lja-Chr4 65209359 65210096 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3457 1 164 Type I MADS-box Gene Family AT5G48670 48.851 7.66e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja4g3457 SRF-TF 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3457 - - lja:Lj4g3v0730740.1 323.553