Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3444 ATGGGTGCTCCTAAGCAGAAGTGGACTGCGGAAGAAGAAGCGGCGCTGAAAGCCGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACTATACTTACAGATCCTGAGTTCAGTTCCATCTTGCGCATGCGTTCAAATGTAGATCTCAAGGATAAGTGGAGGAATATAAATGTGACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAGAAGAACCTTCCACCCCCCAAAATTGACAATAGCCATTTGGCCTTGAGTACAGTAGTTCAACGTGAAGAAGTTCTTGACACTAAGCCCCTTGCAATTTCTGATGGAACATTGCAATCTCCTAATTCAAAAGACCATATGTCAAGGTTGGGGGATAATCACATATTGGAGGCTATTGTCAATATGAAGGAACAAAAGGGTTGTGACAAGGTGGCCATTGCTTCTTACTTAGAGGAGAAATATCAGTGTCCCCCAAACCTCAGAAAGCTACTATCAACAAAAATGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCTTAAATACAGAATTCCGCCAAGTTCAGCAGTCTCTGAGAAAAGAAGATGCTCTTCCGTGATACTTCTGGAAGATAGGCCCAGAGATTCTCGAGAAACAGAGAAGAGCGATGAAGTCCACATCCTTTCAAAATCCCAAATTGATGCAGAACTATCTAAAGGGAAGAGGATGACAGCTCAAGAGGCAGCGGCTGCAGCTGCAAAAGCAGTTGTTGAGGCAGAACTTGCCGTTGCACAGGCTGAGGCAGCAGCCAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCATTAAAATGCAAAATGCTTCATTTCTGGTAG 891 0.4534 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPPPKIDNSHLALSTVVQREEVLDTKPLAISDGTLQSPNSKDHMSRLGDNHILEAIVNMKEQKGCDKVAIASYLEEKYQCPPNLRKLLSTKMKHMVASGKIIKEKLKYRIPPSSAVSEKRRCSSVILLEDRPRDSRETEKSDEVHILSKSQIDAELSKGKRMTAQEAAAAAAKAVVEAELAVAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHFW* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3444 296 Coils Coil 250 280 - -
Lja4g3444 296 PANTHER SINGLE MYB HISTONE 4 1 294 IPR044597 GO:0003691
Lja4g3444 296 Pfam linker histone H1 and H5 family 127 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja4g3444 296 Gene3D - 2 59 - -
Lja4g3444 296 CDD SANT_TRF 6 57 - -
Lja4g3444 296 PANTHER MYB TRANSCRIPTION FACTOR 1 294 - -
Lja4g3444 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lja4g3444 296 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lja4g3444 296 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja4g3444 296 SUPERFAMILY "Winged helix" DNA-binding domain 124 196 IPR036390 -
Lja4g3444 296 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Lja4g3444 296 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lja4g3444 296 SMART sant 4 59 IPR001005 -
Lja4g3444 296 Gene3D - 124 196 IPR036388 -
Lja4g3444 296 SMART h15plus2 123 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3444 Lja-Chr4 65091626 65095864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3444 1 240 Single Myb Histone (SMH) Gene Family AT1G49950 47.347 1.14e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja4g3444 Linker_histone 2.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3444 K09422 - gmx:100779583 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0242 2 2238156 2242680 Lja4g3444 4 65091626 65095864 PCT