Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3440 ATGGATACCTTGTTTAGGCTAGTCAATTTTCAATACCAACACCAACCTGATCCATCTCTCAACTCCACCACCAGCATAACATCCAGCAGCTCCAGATCCTCCAGACAAAACTACCCCTATTACCAGCAACATCAAGACCAAGAAGAAGAAGAAGAATGCTTCAACTTTTACATGGATGAAGAAGACCTATCCTCCTCTTCTTCCAAACACTTCTACCCTAACTACCATCATGTATCCACTACTCCTAATTACACAACCACCCTCACCCCCACCCCCGCCACCACCACCGACTACTCCTACCAACCAGCCACCACTGACTACAACCTCGACTTCTCCAGCACGTGGGCGCCCAACCTCCTCCTTGAAACGGCACGCGCCATCGCCGACAAGAACAGCAGCAACCGCGTCCAACACCTCATGTGGATGCTGAACGAGCTGAGCTCCCCTTATGGCGACACCGATCAGAAGCTCGCTGCATACTTCCTCCAAGCCTTGTTCAGCCGCATCACCGAAGCAGGAAGCCGAACCTACCGGACCTTAGCCTCAACCTCAGAGAAGACATGCTCCTTCGAGTCCACGAGAAAGATGTTGCTCAAGTTCCAAGAGGTCAGCCCTTGGACGACGTTCGGCCACGTGGCGTCCAACGGTGCCATCTTGGAAGCCTTGGAAGGCAACTCCAAGCTCCACATAGTGGACATCAGCAACACGTACTGCACCCAGTGGCCAACGCTTTTAGAAGCATTGGCCACTCGCAGCGATGACACCCCGCACCTGAGGTTAACCACCGTTGTCAACGGCGGTGGTGGCTCAGTTCATCGGGTGATGAAGGAAATAGGGACAAGAATGGAGAGGTTCGCTAGGCTCATGGGTGTTCCCTTCAAGTTCCACATCATTCACCATGATGGTGATCTTTCAAACCTCAACTTCTCTCAACTTGACATCAAAGAAGACGAGGCTTTGGCTATTAACTGCGTTAACTCCTTGCATTCCATAACTCCCACCGGAAGCCACCGCGACGGGGTGATATCTTTGCTCCGAGGGCTGCAGCCGAGGGTGTTGACGGTGGTGGAGGAGGAAGCTGATTTCAACGCGGGTTTGGATTTCGTGGAGGGGTTTGCGGAGTGTGTGCGGTGGTTTAGGGTTTACTTTGAAGCCCTAGATGAGAGCTTTGCGAGGACAAGCGGTGAGAGGCTGATGCTGGAGCGTGCGGCGGGGAGGGCGATCATGGAGCTGGTGGCTTGCGATGCGGCCGGGTCGGTGGAGCGGAGGGAGACGGCGGCACGGTGGGCGGGGAGGATGCGTGGGGCGGGGTTTGGCGAGGCGGCGTTTAGCGAGGAGGTTTGCGACGATGTGAGGGCGTTGTTGAGGAGGTACAAGGAAGGGTGGTCGATGGGGCAGTGCTCCGGCGACGGCGGGATGTTCTTGTCGTGGAAGGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGGCCATGA 1473 0.556 MDTLFRLVNFQYQHQPDPSLNSTTSITSSSSRSSRQNYPYYQQHQDQEEEEECFNFYMDEEDLSSSSSKHFYPNYHHVSTTPNYTTTLTPTPATTTDYSYQPATTDYNLDFSSTWAPNLLLETARAIADKNSSNRVQHLMWMLNELSSPYGDTDQKLAAYFLQALFSRITEAGSRTYRTLASTSEKTCSFESTRKMLLKFQEVSPWTTFGHVASNGAILEALEGNSKLHIVDISNTYCTQWPTLLEALATRSDDTPHLRLTTVVNGGGGSVHRVMKEIGTRMERFARLMGVPFKFHIIHHDGDLSNLNFSQLDIKEDEALAINCVNSLHSITPTGSHRDGVISLLRGLQPRVLTVVEEEADFNAGLDFVEGFAECVRWFRVYFEALDESFARTSGERLMLERAAGRAIMELVACDAAGSVERRETAARWAGRMRGAGFGEAAFSEEVCDDVRALLRRYKEGWSMGQCSGDGGMFLSWKEQPVVWASAWRP* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3440 490 Pfam GRAS domain family 118 489 IPR005202 -
Lja4g3440 490 PANTHER PROTEIN SHORT-ROOT 1 489 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Lja4g3440 490 MobiDBLite consensus disorder prediction 16 43 - -
Lja4g3440 490 MobiDBLite consensus disorder prediction 16 46 - -
Lja4g3440 490 ProSiteProfiles GRAS family profile. 107 489 IPR005202 -
Lja4g3440 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 489 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3440 Lja-Chr4 65055922 65057666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3440 1 490 GRAS Transcription Factor Family AT4G37650 56.848 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja4g3440 GRAS 3.8e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3440 - - gmx:100778524 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3440 4 65055922 65057666 Lja4g3440 4 65055922 65057666 ECH
Lja2g0247 2 2283972 2286055 Lja4g3440 4 65055922 65057666 PCT