Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3428 ATGAGTTGCAACGGTTGCCGTGTTCTTCGGAAGGGTTGCAGCGAATCATGTATCCTGCGCCCTTGTTTACAGTGGATCGAAACCCCTGAAGCACAAGGCCACGCCACCGTCTTCGTCGCCAAATTCTTCGGCCGCGCCGGTCTCATGTCCTTCATTTCCAACGTCCCTGAAACCCAACGACCCGCTCTGTTTCAGTCTCTGCTGTTCGAAGCGTGCGGAAGAACGGTGAACCCGGTCAAAGGCGCCGTCGGGCTACTCTGGACCGGGAACTGGCACGTGTGCCAGGCGGCGGTGGAGACGGTGCTTCGCGGCGGGACTCTGAGGCCTTTGCCGGAGCTTAGTGGTTTTGACGCGCCCTCCGATGAGGCTTCTGACACGGATGTTTGGAGGATCCAAGATCCGAGTCCGAATTTCCGGTTTACAAGCTCGCGATCTAACAACAAGGTTTCGGCCGGCGGCGGTAAACGAAGGCGGTCGGAGGACCACGTGAAGCTTCCGGCAGCGGCGGCGGCGATCAACCTTGATCTCCGTCTTACGCCGATTTTCCTGCAGAAAGCTCCGGAGAGTAACCGCCGGGCTGGCTCGCCGTCGATGAACTCGGAGGAGTCCGTTACCACGACGGCGTGCTTGGAGGGTGGAATCGGAGATCAGTGGGCCCACGGCGGAGACCGGAAAGTTCTCAACCTTTTCATCTGA 696 0.5934 MSCNGCRVLRKGCSESCILRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPETQRPALFQSLLFEACGRTVNPVKGAVGLLWTGNWHVCQAAVETVLRGGTLRPLPELSGFDAPSDEASDTDVWRIQDPSPNFRFTSSRSNNKVSAGGGKRRRSEDHVKLPAAAAAINLDLRLTPIFLQKAPESNRRAGSPSMNSEESVTTTACLEGGIGDQWAHGGDRKVLNLFI* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3428 231 MobiDBLite consensus disorder prediction 135 152 - -
Lja4g3428 231 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Lja4g3428 231 MobiDBLite consensus disorder prediction 135 162 - -
Lja4g3428 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 231 - -
Lja4g3428 231 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Lja4g3428 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3428 Lja-Chr4 64855015 64856724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3428 1 230 AS2 family AT3G49940 57.480 3.10e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja4g3428 LOB 4.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3428 - - gmx:100802764 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0268 2 2483476 2485050 Lja4g3428 4 64855015 64856724 ECH
Lja4g3428 4 64855015 64856724 Lja4g3428 4 64855015 64856724 ECH
Lja4g3428 4 64855015 64856724 Lja2g0268 2 2483476 2485050 PCT