Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3427 ATGATGCAATTCACACCCCCATTACCCCCTTTGCACCAAATCACACCCATTTTTTCAAACCCATCTTCCATGAACAAAAATAACCAAATTCCTAGGAATACTAGGCCATGGCCTGCAGGGTTCCCTACTTCCAAATCCCTAAGTAGCTTCGGAGACGCCAACTGCATGGAGCAGTTACTTGTTCACTGCGCCAACGCCATCGAAACCAACGATGTAACCCTCGCCCAGCAGATCCTCTGGGTCCTCAACAACATAGCTCCCCCAGATGGTGACTCCAACCAGCGCCTAGCTCACAGCTTCCTCAGAGCCCTAACTGCCCGAGCAGCCAAGACCGGAAGCTGCAAAATGCTTGTAGAAACTGTAGCTGTCCCTCCCAACAATAACAACTTCACTGTAGACACGCACAAATTCTCAGTCATTGAACTAGCCAACTTCGTTGACTTGACCCCTTGGCATCGCTTCGGCTTCACTGCCGCCAACGCCGCTATACTTGAAGCAACGGAAGGATACTCAGTCATCCACATCGTGGACTTAAGCTTGACACATTGCATGCAGATTCCTACTCTCATAGACGCCATTGCCAGCCGCCACGACGGCGCGCCGCCGGTAATCAAGCTCACCGTACCCGGCTGTAATTATAGCCGTGAAATCCCGCCGGTTCTCGACCTTACTCACGATGAGCTTGGCGCTAAGCTGGTGAATTTTGCTAGGTCAAGGAACGTGATCTTGGAATTTAGAGTGGTTTCTTCAAGTTACACTGATGGTTTCGCAGGTTTGATTGAACACTTGAGAGTGCAGCGCTTGATTCACGCGGCGGAAGCTCGTGCTGCTGAAGCTTTGGTTGTGAACTGTCACATGATGCTTCATTACATCCCTGAAGAAACCCTATCAACCTCTTATAATGCTTATGATTCTTCTTGTGCTAGTTCAAGCATGTCTTTGAGATCATTATTCCTTAAAGCATTGAGGGGTTTGGATCCAACGATTGTCGTTTTGGTGGATGAAGATGCAGACTTAACATCCAGCAACTTGGTTTGCAGATTGAGGTCTGCTTTTAATTACCTCTGGATCCCTTACGACACTGTGGACACGTTTCTTCCAAGAGGGAGCAAGCAAAGGCAGTGGTATGAAGCTGACATTTGCTGGAAGATTGAGAATGTGATAGCGCATGAAGGGGTGAATAGGGTTGAGAGGGTGGAGCGTAGGACTGTGTGGGAACAAAGAATGAGGAATGCGAGCTTTCAAGGGATTGGTTTTAGTGAGGACTCTGTGGTTGAGGTGAAGGCTATGCTGGATGAACATGCTGCTGGGTGGGGATTGAAGAAGGAAGATGAGCATGTTGTGCTCACTTGGAAAGGGCACAATGTTGTTTTTGCTTCTGCTTGGTTGCCTGCTTGA 1398 0.4857 MMQFTPPLPPLHQITPIFSNPSSMNKNNQIPRNTRPWPAGFPTSKSLSSFGDANCMEQLLVHCANAIETNDVTLAQQILWVLNNIAPPDGDSNQRLAHSFLRALTARAAKTGSCKMLVETVAVPPNNNNFTVDTHKFSVIELANFVDLTPWHRFGFTAANAAILEATEGYSVIHIVDLSLTHCMQIPTLIDAIASRHDGAPPVIKLTVPGCNYSREIPPVLDLTHDELGAKLVNFARSRNVILEFRVVSSSYTDGFAGLIEHLRVQRLIHAAEARAAEALVVNCHMMLHYIPEETLSTSYNAYDSSCASSSMSLRSLFLKALRGLDPTIVVLVDEDADLTSSNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGVNRVERVERRTVWEQRMRNASFQGIGFSEDSVVEVKAMLDEHAAGWGLKKEDEHVVLTWKGHNVVFASAWLPA* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3427 465 PANTHER SCARECROW-LIKE PROTEIN 32 27 463 - -
Lja4g3427 465 Pfam GRAS domain family 56 462 IPR005202 -
Lja4g3427 465 ProSiteProfiles GRAS family profile. 47 463 IPR005202 -
Lja4g3427 465 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 463 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3427 Lja-Chr4 64759911 64761946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3427 38 464 GRAS Transcription Factor Family AT3G49950 58.974 8.39e-178 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja4g3427 GRAS 2.3e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3427 - - gmx:100814364 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3427 4 64759911 64761946 Lja4g3427 4 64759911 64761946 ECH