Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3419 ATGATGACAATCAAAATCAATCCTCAAAATCAAAACATGTGCAAATATCTCCACACGCGCCTTAACTATCCCCACAACAACCCACCCGCGCTACTCCTCCGCTTCTTCCTACTCTCCACACTAGTAGCGCCGCTCGCGCAACCTCCAAACCCGCGCACCACCACCACCGTCCCCCAGATCCATCGCCGCCGCCGAGCCATGTCGAAGGCGCGTGTCTACACCGATGTCAACGTTCTTCGCCCCAAGGAGTACTGGGACTACGAGTCTCTCGCCATTCAATGGGGTGAACAAGATAATTATGAGGTTGTGAGGAAAGTGGGAAGGGGGAAGTACAGTGAGGTTTTCGAAGGCGTAAATGTTAATACCAATGAGCCCTGTGTAATGAAGATTCTCAAGCCTGTGAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTCTGTGGAGGACCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACACTCTAAAACTCCAAGCTTAATATTTGAGCATGTCAACAGTACAGATTTTAAAGTTCTGTATCCGACTTTGGCTGATTGTGACATACGCTATTACATATATCAGCTTCTGAAGGCTTTAGATTACTGCCATTCTCAAGGCATAATGCACAGAGATGTCAAGCCTCATAATGTAATGATCGATCATGAATTTCATAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCTTCAAGACACTTTAAGGGCCCTGAACTTCTAGTAGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTGGGTTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTGTGGTCAGGACAACAACGATCAGCTTGTAAAAATAGCTAAGGTGCTTGGGACTGATGAATTGAATGCATATCTGAATAAGTATCATCTTGTGATTGACCCTGAACTTGATGCTCTACTTGGAAGTCACAGTCGCAAGCCTTGGACTAAATTTATCAATTCCCATAATCAGCATCTTGTGTCTCCAGAGGCAATCGATTTTCTTGATAAGCTTCTTCGATATGACCACCAGGACAGGCTAACGGCAAGAGAAGCAATGGAACATCCATATTTCTCTCTGGTTAGGGCAGCAGAAAATAGCTCTATGAGAACACAGTAA 1200 0.4333 MMTIKINPQNQNMCKYLHTRLNYPHNNPPALLLRFFLLSTLVAPLAQPPNPRTTTTVPQIHRRRRAMSKARVYTDVNVLRPKEYWDYESLAIQWGEQDNYEVVRKVGRGKYSEVFEGVNVNTNEPCVMKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEHVNSTDFKVLYPTLADCDIRYYIYQLLKALDYCHSQGIMHRDVKPHNVMIDHEFHKLRLIDWGLAEFYHPGKEYNVRVASRHFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFCGQDNNDQLVKIAKVLGTDELNAYLNKYHLVIDPELDALLGSHSRKPWTKFINSHNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMEHPYFSLVRAAENSSMRTQ* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3419 399 CDD STKc_CK2_alpha 81 385 IPR045216 GO:0004674|GO:0006468
Lja4g3419 399 Gene3D Phosphorylase Kinase; domain 1 86 171 - -
Lja4g3419 399 Pfam Protein kinase domain 100 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3419 399 Gene3D Transferase(Phosphotransferase) domain 1 172 397 - -
Lja4g3419 399 SMART serkin_6 100 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3419 399 SUPERFAMILY Protein kinase-like (PK-like) 72 386 IPR011009 -
Lja4g3419 399 PANTHER CASEIN KINASE II SUBUNIT ALPHA 31 399 IPR045216 GO:0004674|GO:0006468
Lja4g3419 399 ProSitePatterns Protein kinases ATP-binding region signature. 106 129 IPR017441 GO:0005524
Lja4g3419 399 ProSiteProfiles Protein kinase domain profile. 100 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3419 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Lja4g3419 399 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 31 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3419 Lja-Chr4 64588376 64593509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3419 98 385 Core Cell Cycle Gene Families AT3G48750 32.776 6.32e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lja4g3419 Pkinase 7.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3419 K03097 - gmx:100819679 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3419 4 64588376 64593509 Lja4g3419 4 64588376 64593509 ECH
Lja2g0275 2 2539933 2545908 Lja4g3419 4 64588376 64593509 PCT