Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3406 ATGACGATATCTGGGAACCCACAAGAGCAGGAGCTGCCACTGTTAGCTGACACATGCATTGAAGAAGAAGAAGAAGAGACTGCATATGATTCCTCTGAGAAGATAGTGGTGGTTGGAATCGACGAGGAAGGGAACTTTGACAGCCAGCAGGTTCCGCCGTTCTCATGGAAGAAGCTATGGCGGTTCACAGGGCCAGGGTTTCTGATGTGTATAGCGTTTCTGGACCCGGGGAACCTGGAGGGTGACCTTCAAGCGGGTGCCATTGCAGGGTACTCGCTGCTGTGGCTTTTGATGTGGGCCACTGGCATGGGGCTGCTAATTCAGCTCTTGTCGGCGCGGCTCGGCGTCGCCACCGGGAAGCACTTGGCGGAGGAGTATCCCACGTGGGCTAGGATGGTGCTGTGGGCCATGGCGGAGGTTAATCTCATTGGTTCTGATATTCAAGAGGTTATTGGCAGTGCTATTGCCATTCGGGTTCTTAGTAACGGGGTCATGCCCCTTTGGGCTGGGGTTGTCATTACTGCTCTTGATTGTTTTATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGAGATTCGAAGCTTTTTTCGCTGTTCTTATTGGGATAATGGCACTGTCGTTCGCGTGGATGTTTGGTGAAACAAAGCCTTGTGGCAAGGATCTTCTTCTTGGCATTTTGGTTCCAAAACTCAGCTCTAGAACTATACAACAAGCTGTTGGAGTTGTGGGTTGTCTTATAATGCCTTACAATCTATTCTTGCACTCTGCTCTTGTCCAATCAAGGAAGATTGACCACACCAACAAAGGACGAGTTCAAGAAGCTCTTAACTATTACTCTATTGAGTCCACCATTGCGCTTCTCGTCTCCTTTGTCATTAACATATTTGTAACATCTGTGTTTGCCAAGGGGTTTTATGGTTCTGAAATAGCAAATAGCATTGGTCTTGCAAATGCAGGACAATATCTTCAGGAGGCCTATGGTAGTGGAGTATTTCCAATATTATACATATGGGGTATTGGTTTATTGGCAGCCGGACAAAGTAGCACTATTACTGGTACTTATGCTGGACAATTTATCATGGGAGGATTTCTAAATTTAAGGATCAAAAAATGGATGAGGGCGTTAATCACTCGAAGTTGTGCAATAATACCAACCATGATTGTTGCTCTTATATTTGATTCCTCAGAGCAATCACTGGATGTTCTGAGTGGGTGGCTTAATGTTCTTCAGTCAGTCCAAATCCCATTTGCACTTATTCCATTGCTCTGTCTAGTTTCAAAGGAGGAGATAATGGGTACTTTTAAAATTGGCACTGTCCTCAAGACTATTTCTTGGCTTGTGGCTGCTCTGGTGATAGTGATTAATGGCTATTTCTTGCTGGAATTCTTCTCCTCTGAAGTGAATGGAGCATTAGTTGGCGCTATACTGGGTGCACTGACCGCTGCATATGTTATGTTCATAATATATCTTCTGTGGCGAGCCATTACCTGTTCACCTTGGCAAAAATTCACACAATCAAAGACAATTGCTCACTCAGAAAGTTGA 1545 0.4505 MTISGNPQEQELPLLADTCIEEEEEETAYDSSEKIVVVGIDEEGNFDSQQVPPFSWKKLWRFTGPGFLMCIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATGMGLLIQLLSARLGVATGKHLAEEYPTWARMVLWAMAEVNLIGSDIQEVIGSAIAIRVLSNGVMPLWAGVVITALDCFIFLFLENYGVRRFEAFFAVLIGIMALSFAWMFGETKPCGKDLLLGILVPKLSSRTIQQAVGVVGCLIMPYNLFLHSALVQSRKIDHTNKGRVQEALNYYSIESTIALLVSFVINIFVTSVFAKGFYGSEIANSIGLANAGQYLQEAYGSGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRIKKWMRALITRSCAIIPTMIVALIFDSSEQSLDVLSGWLNVLQSVQIPFALIPLLCLVSKEEIMGTFKIGTVLKTISWLVAALVIVINGYFLLEFFSSEVNGALVGAILGALTAAYVMFIIYLLWRAITCSPWQKFTQSKTIAHSES* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3406 514 Pfam Natural resistance-associated macrophage protein 80 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3406 514 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 17 513 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3406 514 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 57 431 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3406 514 Hamap Divalent metal cation transporter MntH [mntH]. 43 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3406 514 PRINTS Natural resistance-associated macrophage protein signature 373 390 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3406 514 PRINTS Natural resistance-associated macrophage protein signature 407 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3406 514 PRINTS Natural resistance-associated macrophage protein signature 345 364 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3406 514 PRINTS Natural resistance-associated macrophage protein signature 134 160 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3406 514 PRINTS Natural resistance-associated macrophage protein signature 238 261 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3406 514 PRINTS Natural resistance-associated macrophage protein signature 164 183 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3406 514 PRINTS Natural resistance-associated macrophage protein signature 189 210 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3406 514 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 17 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3406 Lja-Chr4 64419736 64426179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3406 34 500 Inorganic Solute Cotransporters AT2G23150 76.000 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3406 K21398 - gmx:100812381 844.343