LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g3405	ATGACTCGTCGGAGAAAATTGTGGGAGAAGCTATGGCGGTTCACTGGACCAGGGTTTCTGATGTGCATAGCGTTTCTGGATCCGGGGAACCTGGAAGGGGACCTACAAGCGGGTGCCATTGCAGGGTACTCGTTGCTGTGGCTTCTCATGTGGGCCACCGCCATGGGGCTGCTAATTCAGCTCCTGTCGGCGCGGCTCGGTGTCGCCACCGGGAAGCACTTGGCGGAGCTGTGCAGGGAGGAGTACCCTACGTGTGCTAGGATGGTGCTGTGGGTCATGGCGGAGGTTAATCTCATTGGGTCCGATATACAAGATGTTATTGGCAGCGCTATTGCCATCCGGATTCTCAGTAATGGGGTCATGCCCCTTTGGGCTGGGGTCGTCATTACTGCTCTTGATTGTTTTATTTTTCTCTTTTTTGAGAACTATGGTGTGAGAAGATTCGAAGCTTTTTTTGGTGTTCTTATTGGGATAGTGGCACTAATATTCGCGTGGATGTTTGTTGAAACAAAGCCCAGTGGCAAGGAAGTTCTTCTTGGCATTTTTGTTCCAAAGCTCAGCTCCAGAACTATACAGCAGGCTGTTGGAGTTGTGGGTTGCCTTATAATGCCTTATAATCTATTCTTGCACTCTGCTCTTGTTCAATCAAGGAAGATTGACCACACCAACAAAGGACGAGTTCAAGAAGCTCTTAACTATTACTCTATTCAGTCCACCCTTGCGCTTCTCGTCTCCTTTGTCATTAACATATTTGTAACATCTGTGTTTGCCAAGGGGTTTTATGGTTCTAAAATAGCAAATAACATTGGTCTTGCAAATGCAGGACAATATCTTCAGGAGGTGTATGGTAGTGGAGTATTTCCAATATTATTTATATGGGGTATTGGTTTATTAGCAGCCGGACAAAGTAGCACTATTACTGGTACTTATGCTGGGCAATTTATCATGGGAGGATTTCTAAATTTAAGGATCAAAAAATGGATGAGGGCATTAATCACCCGCAGTTGTGCAATAATACCAACCATGGCTGTTGCTCTTATATTTGATTCCTCAAAGCAATCACTGGATGTTCTTAGTGGGTGGCTTAATGTTATTCAGTCAGTCCAAATCCCATTTGCACTTATTCCTTTGCTCTGTCTAGTTTCAAAGGAGGAGATAATGGGCACTTTCAGAATTGGCGTTGTCCTCAAGACTATTTCTTGGCTTGTGGCTGCTCTGGTGATAATGATTAATGGCTATTTCTTGATGGAATTCTTCTCATCTGAAGTGAATGGAGCAATAGTTGGCGTTATACTGGGTATGCTAACCGCTGTATATGTTGGATTCATAATATATCTTATTTGGCGGGCCCTTAGCTATTCACCTTGGAAAAAATTCACACAAACAAAGACGATTGCTCTCTCAGAATTCAGAAAGTTGAGTAATTAA	1428	0.4391	MTRRRKLWEKLWRFTGPGFLMCIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPTCARMVLWVMAEVNLIGSDIQDVIGSAIAIRILSNGVMPLWAGVVITALDCFIFLFFENYGVRRFEAFFGVLIGIVALIFAWMFVETKPSGKEVLLGIFVPKLSSRTIQQAVGVVGCLIMPYNLFLHSALVQSRKIDHTNKGRVQEALNYYSIQSTLALLVSFVINIFVTSVFAKGFYGSKIANNIGLANAGQYLQEVYGSGVFPILFIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRIKKWMRALITRSCAIIPTMAVALIFDSSKQSLDVLSGWLNVIQSVQIPFALIPLLCLVSKEEIMGTFRIGVVLKTISWLVAALVIMINGYFLMEFFSSEVNGAIVGVILGMLTAVYVGFIIYLIWRALSYSPWKKFTQTKTIALSEFRKLSN*	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g3405	475	PRINTS	Natural resistance-associated macrophage protein signature	90	116	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja4g3405	475	PRINTS	Natural resistance-associated macrophage protein signature	301	320	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja4g3405	475	PRINTS	Natural resistance-associated macrophage protein signature	363	382	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja4g3405	475	PRINTS	Natural resistance-associated macrophage protein signature	120	139	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja4g3405	475	PRINTS	Natural resistance-associated macrophage protein signature	194	217	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja4g3405	475	PRINTS	Natural resistance-associated macrophage protein signature	329	346	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja4g3405	475	PRINTS	Natural resistance-associated macrophage protein signature	145	166	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja4g3405	475	Pfam	Natural resistance-associated macrophage protein	32	392	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja4g3405	475	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	10	387	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja4g3405	475	PANTHER	METAL TRANSPORTER NRAMP3 PROTEIN	8	468	-	-
	Lja4g3405	475	Hamap	Divalent metal cation transporter MntH [mntH].	2	419	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Lja4g3405	475	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	8	468	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g3405	Lja-Chr4	64401030	64415201	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja4g3405	8	456	Inorganic Solute Cotransporters	AT2G23150	76.169	0.0	717

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g3405	K21398		-	gmx:547711	780.015

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g3405	4	64401030	64415201	Lja4g3405	4	64401030	64415201	ECH
	Lja2g0289	2	2653347	2656467	Lja4g3405	4	64401030	64415201	PCT