Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3404 ATGGCTCGGAACCCGAGAGAACAGGAGCAGCAGCCACTGTTGGAAGTAGAGGAAGAGGAAGAGACGGCGTATGACTCATCGGAGAAGATTGTGGTGGTGGGAATCGACGAGGAAGAGGACTACGGCGGCAAGGTTCCGCCGTTTTCATGGAAGAAGCTATGGCGGTTCACAGGGCCAGGGTTTCTCATGTGCATAGCGTTTCTCGATCCGGGGAACCTGGAGGGGGACTTACAAGCGGGTGCCATTGCAGGGTACTCGTTGCTGTGGCTTTTGATGTGGGCTACTGGCATGGGGCTGCTAATTCAGCTCTTGTCGGCGCGGCTTGGAGTCGCCACCGGGAAGCACTTGGCGGAGCTGTGCAGGGAGGAGTACCCCACGTGGGCTAGGATGGTGCTGTGGGTTATGGCTGAGGTTGCTCTCATTGGTTCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCGATAAGGATTCTCAGTAATGGGGTTGTGCCCCTTTGGGCTGGGGTTGTCATTACTGCTCTTGATTGTTTTATTTTTCTCTTTCTGGAGAACTATGGTGTGAGGTCATTGGAAGCATTTTTTGGTGTTCTTATTGGGATAATGGCACTGGCGTTCGCGTGGATGTTTGGTGAAACACAGCCCAGCGGCAAGGAACTTCTTGTTGGCATTTTGGTTCCAAAACTCAGCTCCAGAACTATACAGCAGGCTGTTGGAGTTGTGGGCTGCCTTATAATGCCTTACAATGTATTCTTGCACTCTGCTCTTGTTCAATCGAGGAAGATTGACCACAGCAACAAAGGACGGGTTCAAGAAGCTCTTAACTATTACTCTATAGAGTCCACCCTTGCACTTGTCGTCTCCTTTGTCATTAACATATTTGTGACAACTGTGTTTGCCAAGGGGTTTTATGGTTCTGAAGTAGCAGATAGCATTGGTCTTGTAAATGCAGGACAGTATCTTCAGGACGCGTATGGTGGTGGAGTAGTTCCAATTTTATATATATGGGGTATTGGGTTATTGGCAGCCGGCCAAAGTAGCACTATTGCTGGTACTTATGCCGGACAATTTATCATGGGAGGGTTTCTAAATTTAAAGATCAAAAAATGGATGAGGGCGTTAATTACCCGAAGTTGTGCAATAGTACCAACCATGATTGTTGCTCTTATATTTGATTCCTCAGAGCAATCGCTGGATGTTCTGAATCAGTGGCTTAATGTTCTTCAGTCAGTCCAAATCCCCTTTGCTGTTATTCCTTTACTCTGTCTGGTTTCCAAGGAGGAGATAATGGGCACTTTCAAAATTGGTGCTGTCCTCAAGACTATTTCTTGGCTTGTGGCTGCTCTGGTGACAATGATTAATGGCTATCTCTTGGTGGAATTCTTCTCCTCTGAAGTGAATGGAGCAATAGTTGGCGCTGTACTCGGTACGCTAACCGCTGCATATGTTGGATTCATAATATATCTTATTTGGCGTGCATTTACCTTTTCACCTTGGCAAAAGGTTTCCCAATCAAAGACAATTGCTCACTCAGAGAGTTGA 1539 0.4685 MARNPREQEQQPLLEVEEEEETAYDSSEKIVVVGIDEEEDYGGKVPPFSWKKLWRFTGPGFLMCIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATGMGLLIQLLSARLGVATGKHLAELCREEYPTWARMVLWVMAEVALIGSDIQEVIGSAIAIRILSNGVVPLWAGVVITALDCFIFLFLENYGVRSLEAFFGVLIGIMALAFAWMFGETQPSGKELLVGILVPKLSSRTIQQAVGVVGCLIMPYNVFLHSALVQSRKIDHSNKGRVQEALNYYSIESTLALVVSFVINIFVTTVFAKGFYGSEVADSIGLVNAGQYLQDAYGGGVVPILYIWGIGLLAAGQSSTIAGTYAGQFIMGGFLNLKIKKWMRALITRSCAIVPTMIVALIFDSSEQSLDVLNQWLNVLQSVQIPFAVIPLLCLVSKEEIMGTFKIGAVLKTISWLVAALVTMINGYLLVEFFSSEVNGAIVGAVLGTLTAAYVGFIIYLIWRAFTFSPWQKVSQSKTIAHSES* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3404 512 Pfam Natural resistance-associated macrophage protein 74 435 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3404 512 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 51 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3404 512 Hamap Divalent metal cation transporter MntH [mntH]. 38 461 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3404 512 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 11 511 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3404 512 PRINTS Natural resistance-associated macrophage protein signature 162 181 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3404 512 PRINTS Natural resistance-associated macrophage protein signature 371 388 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3404 512 PRINTS Natural resistance-associated macrophage protein signature 187 208 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3404 512 PRINTS Natural resistance-associated macrophage protein signature 236 259 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3404 512 PRINTS Natural resistance-associated macrophage protein signature 132 158 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3404 512 PRINTS Natural resistance-associated macrophage protein signature 343 362 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3404 512 PRINTS Natural resistance-associated macrophage protein signature 405 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja4g3404 512 MobiDBLite consensus disorder prediction 1 22 - -
Lja4g3404 512 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 11 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3404 Lja-Chr4 64392753 64396583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3404 5 505 Inorganic Solute Cotransporters AT2G23150 75.937 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3404 K21398 - gmx:100812381 859.751