Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3402 ATGGGGGAAGTTGATGATCAAGTATCAATCAATAAACAAGACATGGATGATGGTGGCTCACAAAACATTGCCAACAATGAATTTGTAAGCACTGAAGGGGATAACAACTTAGGACAATGGTTGAGTTTGGGCCTCAGAGGAACCATTAATCCTCTTGAAGGTTCTGATCAATCAAAACCCCTCCCAAACAAGGTGTTCTCATGCAACTTTTGCATGAGAAAATTCTACAGTTCACAAGCCTTGGGGGGTCACCAGAATGCACACAAGAGGGAACGAGAAGCGGCAAGATGCTACCAATCTCATAGAATCATGGTAGCATCAACAGGGCGTGCTGCTTACTCTTCACTTGGAATCCAGCCACACTCGCTTGTGCACAAGACAGGCAGAGAAAGGTCTTCTTCTCTGGTGGCTCGGTTCAATGATGCAAGTTCTGGGGTTGTTGGAATGGCATTAACACCTTTTGTGCTTGAACAAGCTGCAATGGATTTGATTTGGCCAGGGAGCTTTCGGATGGACTTGCCAAAGCAAGAATCAGACACAAATAAGCTTGATTTAGATCTTCGGCTCTGA 570 0.4491 MGEVDDQVSINKQDMDDGGSQNIANNEFVSTEGDNNLGQWLSLGLRGTINPLEGSDQSKPLPNKVFSCNFCMRKFYSSQALGGHQNAHKREREAARCYQSHRIMVASTGRAAYSSLGIQPHSLVHKTGRERSSSLVARFNDASSGVVGMALTPFVLEQAAMDLIWPGSFRMDLPKQESDTNKLDLDLRL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3402 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Lja4g3402 189 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Lja4g3402 189 Gene3D Classic Zinc Finger 50 116 - -
Lja4g3402 189 MobiDBLite consensus disorder prediction 1 26 - -
Lja4g3402 189 SUPERFAMILY beta-beta-alpha zinc fingers 63 93 IPR036236 -
Lja4g3402 189 PANTHER ZINC FINGER PROTEIN 4-LIKE 7 189 - -
Lja4g3402 189 PANTHER ZINC FINGER PROTEIN 4-LIKE 7 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3402 Lja-Chr4 64341076 64341828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3402 41 178 C2H2 Transcription Factor Family AT1G24625 43.357 5.16e-23 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3402 - - ccaj:109809498 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3402 4 64341076 64341828 Lja4g3402 4 64341076 64341828 ECH