Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3395 ATGTTAGGGAGTTCTTCTTCCACTGCTGCTGCTGCTATTCCTATGGTTCCTTCTTCTCCAAAGCATGATGTGTTCCTGAGCTTCCGAGGGGAAGACACACGTGACAGCTTCACCAGTCATCTTTATGCTCAACTTTGCAGGAAAAAGATTGAAACATTCATAGATAACAGACTAGACCGAGGCGATGAGATCTCACCATCACTCCGCAAAGCAATTGAGGAATCCATGATTTATGTTATCATTTTCTCGAAAAACTATGCTTCTTCCTCGTGGTGTTTGGATGAACTCACGGAGATACTGGAATGCAGGAGAAGGTATGGAAGGGATGTGATACCTGTTTTCTACAAGGTGGATCCGTCAAGTTTGAGGCATCAGAGAGGGAGCTACGCAGATGCGTTTGTGAAGCATGAACTGCGATTCGAGGTTGGAATTACACGGAGGTGGAAGGCTGCTCTAACTGAAGCAGCTGGACTCTCCGGCTGGAATTCACACGTCACCAGACCAGAGTCCATGCTTGTTGATGGTATTGTGGAAGATATTTTACGAAAATTGGATCGTTCTTCCTCAAGTGATAATCAAGGAATGATTGCAATTGACAAGCATATTGCACAGATCGAGTCCTTGTTGCACCTTGAGTCACCAGCTGTTCGGATCATAGGAATTTGGGGCATGGGAGGCATAGGTAAAACTACACTGGCTCGAGCAGTATATCACAAACTGGAAGCTAAATTCAGATCCTGCCGCCTTGTTGCAAATACTCAACAAGAAATAGAAAGAGGTGATTGTCTGCGTGATAAATTGGGAGTAATGTTCAATCGGGAAAAGGTTCTCCTGATTTTAGATGACGTGAACAATTCGGTTCAGCTGAAAATTTTGATTGGAGGGCACGGTAACTTCGGCCAGGGCAGTAGGATCATTGTCACTAGTAGAGACATGCAAGTTCTTAAGAATGCCGAAGCTGATGATATCTATGAAGTCAAGCAGATGAATTTCCAAAACTCTCTACGGCTCTTCAGTTTAAATGCCTTTAAACAAAACTATCCCAAAGAAACTTATATGGCCTTGGTAGAAAAAGTATTAAATTATGCTCAAGGGGTTCCATTAGCTCTCAAAGTTTTAGGGTCACTGCTTTATGGTAGAACAAAGAAAGCATGGGAAAGTGAGTTGCAAAAGCTGGAAAAGCTTCCTGATCTTGAAATTTTCAATGTATTGAAGTTAAGTTATGATGGTCTTGATGATGAACAGAAGGATATTTTTCTTGATATATCTTGCTTCTATATTTCACATCTGGAGAATGATGTAGTAGAAACGCTAGATTGCTTTGGTTTCTCTGCTGACATTGGAATGAATGTCCTGAAAGATAGGTGCCTTATATCTACCTCGGAAGGTGTAATTATGATGCATGATCTCATACAAGAAATGGCAAAAGAAATTGTTCGCCAGCAAGGTGTCAATGATCCTGGAAAACGCAGTCGATTATGGAAGAATGAAGAAATTTGTCATGTTTTAAGAAAGAACAAGGGGACAGATGCAATCCAGTGCATAGTCCTCAACATGGACCACATAGAAAAAGTTCAACTACTACATGCTGAAACTTTCAAAAACATGCCTAATCTGAGAATGCTCAAGCTCTTTAAGTCTTCTCTTTGGGGAAAATCCAATCTGGTCCTTCCTGCAGTACTTGAAGGTCTTCCAAATGATTTAAAATTTCTTCATTGGGATTACTTTACTCAAAGATCTTTGCCGCTGGACTTTTGTCCAGAAAATCTTGTTAAGCTTGAGATGAGTCATAGCAATCTTGAACAGCTTTGGGAGGAAGACCAGGATTTACCACATTTGAAAATGCTCGATCTTAGTTTTTCTGGGAACCTGATTCGAATACCAGACCTTTCTAAGTTCCCAAATATTGAAGAAATAATTCTTAGCTATTGTGAAAGCTTGGTTCAAGTTTACTCCTCGAGTTTCCTCTGCAAGCTTAAGTATTTATGTTTGAGTGGTTGTGTTGGGCTTAGAAGTTTAAATCTTCCTAGCAATATTCTTTCGAGATCTTCTGGGTTAGTTCTCCTCGACAGTTGTGGCAAGCTCGAAACATTTTCAATTAGTAGTCAAGTCAAGGTGGTTGAATCATATAGCTGTTCGGGTAGTGATGGATTTTTGGGAGCCATAGAAGTTGACAATGAAGCAAAGCTTCGCTGGACTTACCCAAAAGGTACATATGGCTATGGCTTTCATGAGATGAATGGAAGAAATCTGTATGTAACATCTTTGAGAATACTGATGCCCTCACAATCTTTGCATGAGCTTTGCTGGTTAGATCTTCGTCATTGTCAGTCCTTGACTAGCCTTCCAATTGACCTTTGTAAGTTGAAATTGCTACGAAGACTTTATCTGAGTGGTTGCTCAAATTTGGAAAAATTCCCTGAAATTGAGGAGACAATGGAAAATTTATCAGCAATTGTCTTAGATGCAACATCAATACAGGAACTACCTTCATCCTTGTACCATTTGGTCGGGCTCGAAGAGTTGAGCTTGCACAATTGCCAAAGGCTTGAGAATATTCCCTCTTCCATTGGAAGTCTCACCAAACTTAGCAAGTTAGGCCTTACCGGCTGTAATTCACTCAAAACTTTTCCGAGTAGCATTTTCAAATTGAAGTTGACAAAACTTGATTTGAATGGCTGTTTGATGCTAAATACTTTCCCAGAGATCTTGGAGCCTGCAGAAAGTTTTACTCACATTAACTTATCCAAAACAGCTATTAAAGAACTGCCTTCATCGTTGGATTATTTGGTCGGGCTTCAAACCTTGGGTTTGAACTTGTGCAGTGATCTTGAGTCACTTCCAAACAGCATTATTAATCTAAGCCTTCTCTCCCAGCTTGATTGTTCAGGCTGTGGCAAATTATCTAAAATCCCAAATGACATGGGTCGGTTGTCATCATTAAGGGAATTGTCTCTGCAAGGAACCGGAATTGTGAACCTTCCAGAGAGCATTGCTTATCTCTCAAGCTTGGAATCACTGGATGTAAGTGATTGCAGAAAGCTTGAATGTATCCCACAGCTTCCGCCATTTCTGAAACTGTTAACAGCATTTGATTGCCTTTCCATTAAAAGAATGATGGCAAATTCTAGGGTTAAACACCCCTCAGATTCCAAAGAGGAACAGGATCCAAGTGCTCTTAGTAATGTTGTGGCTGATGCAAGGCTTAGGATCACCGGGGATGCATACAGCTCCGTGTTCTATTGCTTTCCAGGGAGTGCAGTTCCTGATTGGTTTCCTTTTCGTTGTGAGGGAAATTCAGTAACTGTGAGTAAAGATTCTCTGAATTGGTGCAATGATGTTAGGCTCACTGGTTTCGCTCTATGTGTCGTTTTGCAAGGAATTGATATGGATGATATTTGCAAAGAAGTCAGTTTTAGATACAGATTAACATTTGAATCTGATGGTCGTACATACGTTCTTCCCAACCGAGATGGGCTAAACAATTATTTCTCTTGGAGGGGTCGATGCAGATTAATCCTGCGAGATCACACAGTCGTATGGAAATATTGCTTATTGGACTCTGCAATCATTGACAACGGGCTCTCTCATGCCCATAACTTCACTTTTGAGATCAGCAATCCATTTTATCTTGAATTTTGTCCAGAGGTGAAAGAGTGCGGAATTTTCCCTCTTTATACCAAAGAAAAAAATGATATTAATGGTATTGTTTACTCTTTAAGCTTCCAGAGAGTTTCAGATAATGATTTTGAAGAACATAGTGGGAAGAGGCAGTGCCTAAGGTGA 3786 0.4054 MLGSSSSTAAAAIPMVPSSPKHDVFLSFRGEDTRDSFTSHLYAQLCRKKIETFIDNRLDRGDEISPSLRKAIEESMIYVIIFSKNYASSSWCLDELTEILECRRRYGRDVIPVFYKVDPSSLRHQRGSYADAFVKHELRFEVGITRRWKAALTEAAGLSGWNSHVTRPESMLVDGIVEDILRKLDRSSSSDNQGMIAIDKHIAQIESLLHLESPAVRIIGIWGMGGIGKTTLARAVYHKLEAKFRSCRLVANTQQEIERGDCLRDKLGVMFNREKVLLILDDVNNSVQLKILIGGHGNFGQGSRIIVTSRDMQVLKNAEADDIYEVKQMNFQNSLRLFSLNAFKQNYPKETYMALVEKVLNYAQGVPLALKVLGSLLYGRTKKAWESELQKLEKLPDLEIFNVLKLSYDGLDDEQKDIFLDISCFYISHLENDVVETLDCFGFSADIGMNVLKDRCLISTSEGVIMMHDLIQEMAKEIVRQQGVNDPGKRSRLWKNEEICHVLRKNKGTDAIQCIVLNMDHIEKVQLLHAETFKNMPNLRMLKLFKSSLWGKSNLVLPAVLEGLPNDLKFLHWDYFTQRSLPLDFCPENLVKLEMSHSNLEQLWEEDQDLPHLKMLDLSFSGNLIRIPDLSKFPNIEEIILSYCESLVQVYSSSFLCKLKYLCLSGCVGLRSLNLPSNILSRSSGLVLLDSCGKLETFSISSQVKVVESYSCSGSDGFLGAIEVDNEAKLRWTYPKGTYGYGFHEMNGRNLYVTSLRILMPSQSLHELCWLDLRHCQSLTSLPIDLCKLKLLRRLYLSGCSNLEKFPEIEETMENLSAIVLDATSIQELPSSLYHLVGLEELSLHNCQRLENIPSSIGSLTKLSKLGLTGCNSLKTFPSSIFKLKLTKLDLNGCLMLNTFPEILEPAESFTHINLSKTAIKELPSSLDYLVGLQTLGLNLCSDLESLPNSIINLSLLSQLDCSGCGKLSKIPNDMGRLSSLRELSLQGTGIVNLPESIAYLSSLESLDVSDCRKLECIPQLPPFLKLLTAFDCLSIKRMMANSRVKHPSDSKEEQDPSALSNVVADARLRITGDAYSSVFYCFPGSAVPDWFPFRCEGNSVTVSKDSLNWCNDVRLTGFALCVVLQGIDMDDICKEVSFRYRLTFESDGRTYVLPNRDGLNNYFSWRGRCRLILRDHTVVWKYCLLDSAIIDNGLSHAHNFTFEISNPFYLEFCPEVKECGIFPLYTKEKNDINGIVYSLSFQRVSDNDFEEHSGKRQCLR* 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3395 1261 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 754 852 - -
Lja4g3395 1261 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 702 - -
Lja4g3395 1261 SMART till_3 21 158 IPR000157 GO:0007165
Lja4g3395 1261 Pfam TIR domain 21 192 IPR000157 GO:0007165
Lja4g3395 1261 Gene3D - 19 186 IPR035897 -
Lja4g3395 1261 Gene3D - 187 324 IPR027417 -
Lja4g3395 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 422 IPR027417 -
Lja4g3395 1261 ProSiteProfiles TIR domain profile. 20 184 IPR000157 GO:0007165
Lja4g3395 1261 Gene3D Ribonuclease Inhibitor 743 885 IPR032675 -
Lja4g3395 1261 SUPERFAMILY L domain-like 467 702 - -
Lja4g3395 1261 Pfam NB-ARC domain 201 246 IPR002182 GO:0043531
Lja4g3395 1261 Pfam NB-ARC domain 256 394 IPR002182 GO:0043531
Lja4g3395 1261 Gene3D Ribonuclease Inhibitor 886 1044 IPR032675 -
Lja4g3395 1261 SUPERFAMILY L domain-like 756 1029 - -
Lja4g3395 1261 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 839 1127 IPR044974 GO:0006952
Lja4g3395 1261 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 702 IPR044974 GO:0006952
Lja4g3395 1261 PRINTS Disease resistance protein signature 363 377 - -
Lja4g3395 1261 PRINTS Disease resistance protein signature 218 233 - -
Lja4g3395 1261 PRINTS Disease resistance protein signature 999 1015 - -
Lja4g3395 1261 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 839 1127 - -
Lja4g3395 1261 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 161 IPR035897 -
Lja4g3395 1261 Pfam C-JID domain 1083 1229 IPR045344 -
Lja4g3395 1261 Gene3D Ribonuclease Inhibitor 465 718 IPR032675 -
Lja4g3395 1261 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 754 852 IPR044974 GO:0006952
Lja4g3395 1261 Pfam Leucine Rich Repeat 589 608 IPR011713 -
Lja4g3395 1261 Gene3D - 328 412 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3395 Lja-Chr4 64277185 64282154 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3395 767 936 WRKY Transcription Factor Family AT4G12020 39.412 1.72e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3395 - - ccaj:109803335 1370.14