Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3388 ATGGAAGCAGTTTCTTATTCAATTCCCTCCTCTACCAAATTCCAATCACTTCATATTTACACCAAACCCACTCGCTCCAAACTCACTCTTCGCCCGCATCAAATTTCAATCAAACCTTTCTATTCTTCCAAATTCCTCATTCTCCACCACCACCGCCTCCGCTGCGTCGCCGCCGAATCCACCAGTAACCACCACCACAATCATAACCACCATGACCACCACCACGACCACGAGCACCACCATAATCACCACCACCATCATCACCACCACTCACACGGCACCGATGACGCCAATCTCACGGGGCCGCAAAAAGCGATCATCGGGTTCGCCAAAGCCACTAGATGGATGGACTTGGCGAATGTCCTGAGGGAGCATTTGCATCTATGCTGCATCTCCGCGGCTTTGTTCGTCGCCGCCGCGATTTGCCCTCACACCTTGCCTAAACCCTTGATCAAGCCTTTGCAAAACACACTCATTTTCATGGCTTTTCCTTTGGTTGGGGTTTCTGCGTCACTTGATGCTCTTATTGAAATTAGTAGTGGAAAAGTGACTATCCATGTGTTAATGGCAATGGCTGCCTTTGCATCGATATTTATGGGAAATGCTGTGGAAGGAGGGTTACTTCTTGCCATGTTTAATCTCGCGCATATAGCTGAAGAGTATTTCACCGGCCGTTCGATGGTTGATGTTAAAGAGTTGAAGGAGAATTATCCAGATTTTGTGCTTGTTTTGGATACGAAGGATGATAAACTCCCTAACACAGTTGACTTGGCATACAAGAGAGTTCCCGTGCATGATGTGACTGTAGGATCATATATTCTGGTTGGTGCTGGCGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCAAGGCGGTGCTACAATTACCATTGAGCATTTGACAGGGGAAGTCAAACCTCTGGAGGCCAAGGTTGGAGATAGAATTCCTGGTGGTGCTCGGAACTTAGATGGTAGAATAATTGTAAAGGTGATGAAGACATGGAAGGAATCAACACTCAGCAGAATTGTGCAGTTGACTGAAGAAGCGCAGTTGAATAGACCTAACCTTCAAAGGTGGCTGGATAAATTTGGTGAACGTTACAGCAGAGTTGTTGTGGTGTTATCAATTGCTGTTGCTGTTATTGGACCACTTGTATTTAAGTGGCCATTCTTTAGTACACCAGCTTGCAGAGGTTCAATTTACAGAGCCCTAGGGCTCATGGTTGCAGCATCACCGTGTGCCTTGGCTGTGGCCCCATTGGCTTATGCTACAGCAATAAGCTCCTGTGCAAAAAAGGGGATATTACTCAAAGGTGGACATGTTCTGGATGCTCTAGCTTCTTGTCATACTATTGCATTTGACAAAACCGGGACATTGACAACTGGTGGACTTGTATTCAAGGCAATTGAGCCCATTTATGGTCATCACATTATAAACAAGGAAGCGAACATATCTTCCTGTTGCATTCCCACCTGTGAAAAAGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGCACTACCCACCCAATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTTGAATACTTTCCTGGTAGAGGCCTGACTGCTACTGTTAACAGCATTGAGTCAGGAAACGGAGGTGCTAAACTATTGAAAGCATCACTCGGGTCTGTAGACTTCATCACTTCATTTTGTCAATCTGAAGACGAATTAAAAAAGATTAAGGAAGCTGTTGATACATCTTCCTATGGAGGAGAATTTGTCCATGCTGCCCTTTCAGTTAATCAGAAGGTAACATTGATTCATCTAGAGGACAGGCCTCGTCCAGGGGTTTTTAATGTTATTCAGGAGTTGCAAGATGAAGCAAAGCTTCGTGTGATGATGTTGACTGGTGATCATGAATCTAGTGCAAAGAGAGTTGCAAGTGCCGTGGGCATCAATGTGTTTCATTGCAATCTGAAGCCCGAAGATAAGCTGAGTCATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTTGGTGAAGGTATTAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGGAATTGTTCTTGCACAACGTGCTAGTGCAACTGCCATAGCTGTTGCAGATGTATTGTTACTTCGAGAAAATATTTCTGCAGTGCCTTTTTGTATTGCCAAGTCTCGTCAAACAACTTCACTGATTAAACAAAATGTGGCTCTGGCGTTGACCTCTATTATCATGGCTTCTCTTCCGTCAGTTTTAGGATTTGTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCCTGCTTGTTTGTCTCAATTCAATACGTGCTTTAAATGAACCATCTTGGTCCTGGAAGCAGGATGTATTAAATTTGATTACCGAGGTTAAATCTAAACTCCTATCTCTGAGGACAAATATCACTGGCCCAAGCAGCATCACAACGGCAAAATTGTGA 2478 0.4459 MEAVSYSIPSSTKFQSLHIYTKPTRSKLTLRPHQISIKPFYSSKFLILHHHRLRCVAAESTSNHHHNHNHHDHHHDHEHHHNHHHHHHHHSHGTDDANLTGPQKAIIGFAKATRWMDLANVLREHLHLCCISAALFVAAAICPHTLPKPLIKPLQNTLIFMAFPLVGVSASLDALIEISSGKVTIHVLMAMAAFASIFMGNAVEGGLLLAMFNLAHIAEEYFTGRSMVDVKELKENYPDFVLVLDTKDDKLPNTVDLAYKRVPVHDVTVGSYILVGAGESVPVDCEVFQGGATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRIIVKVMKTWKESTLSRIVQLTEEAQLNRPNLQRWLDKFGERYSRVVVVLSIAVAVIGPLVFKWPFFSTPACRGSIYRALGLMVAASPCALAVAPLAYATAISSCAKKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPIYGHHIINKEANISSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVESFEYFPGRGLTATVNSIESGNGGAKLLKASLGSVDFITSFCQSEDELKKIKEAVDTSSYGGEFVHAALSVNQKVTLIHLEDRPRPGVFNVIQELQDEAKLRVMMLTGDHESSAKRVASAVGINVFHCNLKPEDKLSHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALTSIIMASLPSVLGFVPLWLTVLLHEGGTLLVCLNSIRALNEPSWSWKQDVLNLITEVKSKLLSLRTNITGPSSITTAKL* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3388 825 SFLD C1.7: P-type atpase like 433 734 - -
Lja4g3388 825 CDD P-type_ATPase_HM 127 783 - -
Lja4g3388 825 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 185 783 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lja4g3388 825 Pfam E1-E2 ATPase 258 431 - -
Lja4g3388 825 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 258 472 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g3388 825 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 576 762 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja4g3388 825 Gene3D - 462 612 IPR023299 GO:0000166
Lja4g3388 825 MobiDBLite consensus disorder prediction 67 91 - -
Lja4g3388 825 MobiDBLite consensus disorder prediction 60 97 - -
Lja4g3388 825 SUPERFAMILY Calcium ATPase, transduction domain A 259 344 IPR008250 -
Lja4g3388 825 Gene3D - 444 732 IPR023214 -
Lja4g3388 825 PRINTS P-type cation-transporting ATPase superfamily signature 705 717 - -
Lja4g3388 825 PRINTS P-type cation-transporting ATPase superfamily signature 681 700 - -
Lja4g3388 825 PRINTS P-type cation-transporting ATPase superfamily signature 95 109 - -
Lja4g3388 825 PRINTS P-type cation-transporting ATPase superfamily signature 604 615 - -
Lja4g3388 825 PRINTS P-type cation-transporting ATPase superfamily signature 627 637 - -
Lja4g3388 825 Gene3D - 225 349 - -
Lja4g3388 825 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Lja4g3388 825 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 56 810 - -
Lja4g3388 825 Pfam haloacid dehalogenase-like hydrolase 449 694 - -
Lja4g3388 825 SFLD p-type atpase 433 734 IPR044492 -
Lja4g3388 825 SUPERFAMILY HAD-like 449 781 IPR036412 -
Lja4g3388 825 SUPERFAMILY Calcium ATPase, transmembrane domain M 187 765 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3388 Lja-Chr4 64108264 64116978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3388 85 806 Primary Pumps ATPases AT4G37270 74.792 0.0 1078
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3388 K01534 - gmx:100776309 1356.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3388 4 64108264 64116978 Lja4g3388 4 64108264 64116978 ECH